Literature DB >> 19005497

Protists are microbes too: a perspective.

David A Caron1, Alexandra Z Worden, Peter D Countway, Elif Demir, Karla B Heidelberg.   

Abstract

Our understanding of the composition and activities of microbial communities from diverse habitats on our planet has improved enormously during the past decade, spurred on largely by advances in molecular biology. Much of this research has focused on the bacteria, and to a lesser extent on the archaea and viruses, because of the relative ease with which these assemblages can be analyzed and studied genetically. In contrast, single-celled, eukaryotic microbes (the protists) have received much less attention, to the point where one might question if they have somehow been demoted from the position of environmentally important taxa. In this paper, we draw attention to this situation and explore several possible (some admittedly lighthearted) explanations for why these remarkable and diverse microbes have remained largely overlooked in the present 'era of the microbe'.

Mesh:

Year:  2008        PMID: 19005497     DOI: 10.1038/ismej.2008.101

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  44 in total

1.  Comparative analysis of eukaryotic marine microbial assemblages from 18S rRNA gene and gene transcript clone libraries by using different methods of extraction.

Authors:  Amy Koid; William C Nelson; Amy Mraz; Karla B Heidelberg
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

2.  Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms.

Authors:  Ralph Medinger; Viola Nolte; Ram Vinay Pandey; Steffen Jost; Birgit Ottenwälder; Christian Schlötterer; Jens Boenigk
Journal:  Mol Ecol       Date:  2010-03       Impact factor: 6.185

3.  Protist diversity in a permanently ice-covered Antarctic lake during the polar night transition.

Authors:  Scott Bielewicz; Elanor Bell; Weidong Kong; Iddo Friedberg; John C Priscu; Rachael M Morgan-Kiss
Journal:  ISME J       Date:  2011-03-10       Impact factor: 10.302

4.  Evolution of sodium channels predates the origin of nervous systems in animals.

Authors:  Benjamin J Liebeskind; David M Hillis; Harold H Zakon
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-16       Impact factor: 11.205

5.  Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity.

Authors:  Eric Capo; Didier Debroas; Fabien Arnaud; Isabelle Domaizon
Journal:  Microb Ecol       Date:  2015-05-29       Impact factor: 4.552

6.  Single-cell transcriptomics of small microbial eukaryotes: limitations and potential.

Authors:  Zhenfeng Liu; Sarah K Hu; Victoria Campbell; Avery O Tatters; Karla B Heidelberg; David A Caron
Journal:  ISME J       Date:  2017-01-06       Impact factor: 10.302

Review 7.  Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Authors:  David A Caron; Harriet Alexander; Andrew E Allen; John M Archibald; E Virginia Armbrust; Charles Bachy; Callum J Bell; Arvind Bharti; Sonya T Dyhrman; Stephanie M Guida; Karla B Heidelberg; Jonathan Z Kaye; Julia Metzner; Sarah R Smith; Alexandra Z Worden
Journal:  Nat Rev Microbiol       Date:  2016-11-21       Impact factor: 60.633

8.  Strengths and Biases of High-Throughput Sequencing Data in the Characterization of Freshwater Ciliate Microbiomes.

Authors:  Vittorio Boscaro; Alessia Rossi; Claudia Vannini; Franco Verni; Sergei I Fokin; Giulio Petroni
Journal:  Microb Ecol       Date:  2016-12-28       Impact factor: 4.552

Review 9.  Marine genomics: at the interface of marine microbial ecology and biodiscovery.

Authors:  Karla B Heidelberg; Jack A Gilbert; Ian Joint
Journal:  Microb Biotechnol       Date:  2010-09       Impact factor: 5.813

10.  Mapping the protistan 'rare biosphere'.

Authors:  Scott C Dawson; Kari D Hagen
Journal:  J Biol       Date:  2009
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