Literature DB >> 18999463

Simplified model of cytosolic Ca2+ dynamics in the presence of one or several clusters of Ca2+ -release channels.

G Solovey1, D Fraiman, B Pando, S Ponce Dawson.   

Abstract

Calcium release from intracellular stores plays a key role in the regulation of a variety of cellular activities. In various cell types this release occurs through inositol-triphosphate (IP3) receptors which are Ca2+ channels whose open probability is modulated by the cytosolic Ca2+ concentration itself. Thus, the combination of Ca2+ release and Ca2+ diffusion evokes a variety of Ca2+ signals depending on the number and relative location of the channels that participate of them. In fact, a hierarchy of Ca2+ signals has been observed in Xenopus laevis oocytes, ranging from very localized events (puffs and blips) to waves that propagate throughout the cell. In this cell type channels are organized in clusters. The behavior of individual channels within a cluster cannot be resolved with current optical techniques. Therefore, a combination of experiments and mathematical modeling is unavoidable to understand these signals. However, the numerical simulation of a detailed mathematical model of the problem is very hard given the large range of spatial and temporal scales that must be covered. In this paper we present an alternative model in which the cluster region is modeled using a relatively fine grid but where several approximations are made to compute the cytosolic Ca2+ concentration ([Ca;{2+}]) distribution. The inner-cluster [Ca;{2+}] distribution is used to determine the openings and closings of the channels of the cluster. The spatiotemporal [Ca;{2+}] distribution outside the cluster is determined using a coarser grid in which each (active) cluster is represented by a point source whose current is proportional to the number of open channels determined before. A full reaction-diffusion system is solved on this coarser grid.

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Year:  2008        PMID: 18999463     DOI: 10.1103/PhysRevE.78.041915

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  10 in total

1.  A stochastic model of calcium puffs based on single-channel data.

Authors:  Pengxing Cao; Graham Donovan; Martin Falcke; James Sneyd
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

2.  Calcium waves in a grid of clustered channels with synchronous IP3 binding and unbinding.

Authors:  M Rückl; S Rüdiger
Journal:  Eur Phys J E Soft Matter       Date:  2016-11-17       Impact factor: 1.890

3.  Calcium signals driven by single channel noise.

Authors:  Alexander Skupin; Helmut Kettenmann; Martin Falcke
Journal:  PLoS Comput Biol       Date:  2010-08-05       Impact factor: 4.475

4.  Quantifying calcium fluxes underlying calcium puffs in Xenopus laevis oocytes.

Authors:  Luciana Bruno; Guillermo Solovey; Alejandra C Ventura; Sheila Dargan; Silvina Ponce Dawson
Journal:  Cell Calcium       Date:  2010-01-25       Impact factor: 6.817

5.  A simple sequential-binding model for calcium puffs.

Authors:  D Swaminathan; G Ullah; P Jung
Journal:  Chaos       Date:  2009-09       Impact factor: 3.642

6.  Phase-locked signals elucidate circuit architecture of an oscillatory pathway.

Authors:  Andreja Jovic; Bryan Howell; Michelle Cote; Susan M Wade; Khamir Mehta; Atsushi Miyawaki; Richard R Neubig; Jennifer J Linderman; Shuichi Takayama
Journal:  PLoS Comput Biol       Date:  2010-12-23       Impact factor: 4.475

7.  Mean field strategies induce unrealistic non-linearities in calcium puffs.

Authors:  Guillermo Solovey; Daniel Fraiman; Silvina Ponce Dawson
Journal:  Front Physiol       Date:  2011-08-01       Impact factor: 4.566

8.  Arrhythmogenic Current Generation by Myofilament-Triggered Ca2+ Release and Sarcomere Heterogeneity.

Authors:  Viviane Timmermann; Andrew G Edwards; Samuel T Wall; Joakim Sundnes; Andrew D McCulloch
Journal:  Biophys J       Date:  2019-11-20       Impact factor: 4.033

9.  Mechano-Electric Coupling and Arrhythmogenic Current Generation in a Computational Model of Coupled Myocytes.

Authors:  Viviane Timmermann; Andrew D McCulloch
Journal:  Front Physiol       Date:  2020-12-10       Impact factor: 4.566

10.  Three-Dimensional Model of Sub-Plasmalemmal Ca2+ Microdomains Evoked by T Cell Receptor/CD3 Complex Stimulation.

Authors:  Diana Gil; Björn-Philipp Diercks; Andreas H Guse; Geneviève Dupont
Journal:  Front Mol Biosci       Date:  2022-02-23
  10 in total

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