Literature DB >> 18999454

Possibility of single biomolecule imaging with coherent amplification of weak scattering x-ray photons.

Tsumoru Shintake1.   

Abstract

The number of photons produced by coherent x-ray scattering from a single biomolecule is very small because of its extremely small elastic-scattering cross section and low damage threshold. Even with a high x-ray flux of 3 x 10;{12} photons per 100-nm -diameter spot and an ultrashort pulse of 10 fs driven by a future x-ray free electron laser (x-ray FEL), it has been predicted that only a few 100 photons will be produced from the scattering of a single lysozyme molecule. In observations of scattered x rays on a detector, the transfer of energy from wave to matter is accompanied by the quantization of the photon energy. Unfortunately, x rays have a high photon energy of 12 keV at wavelengths of 1A , which is required for atomic resolution imaging. Therefore, the number of photoionization events is small, which limits the resolution of imaging of a single biomolecule. In this paper, I propose a method: instead of directly observing the photons scattered from the sample, we amplify the scattered waves by superimposing an intense coherent reference pump wave on it and record the resulting interference pattern on a planar x-ray detector. Using a nanosized gold particle as a reference pump wave source, we can collect 10;{4}-10;{5} photons in single shot imaging where the signal from a single biomolecule is amplified and recorded as two-dimensional diffraction intensity data. An iterative phase retrieval technique can be used to recover the phase information and reconstruct the image of the single biomolecule and the gold particle at the same time. In order to precisely reconstruct a faint image of the single biomolecule in Angstrom resolution, whose intensity is much lower than that of the bright gold particle, I propose a technique that combines iterative phase retrieval on the reference pump wave and the digital Fourier transform holography on the sample. By using a large number of holography data, the three-dimensional electron density map can be assembled.

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Year:  2008        PMID: 18999454     DOI: 10.1103/PhysRevE.78.041906

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Signal enhancement and Patterson-search phasing for high-spatial-resolution coherent X-ray diffraction imaging of biological objects.

Authors:  Yuki Takayama; Saori Maki-Yonekura; Tomotaka Oroguchi; Masayoshi Nakasako; Koji Yonekura
Journal:  Sci Rep       Date:  2015-01-28       Impact factor: 4.379

2.  Skopi: a simulation package for diffractive imaging of noncrystalline biomolecules.

Authors:  Ariana Peck; Hsing-Yin Chang; Antoine Dujardin; Deeban Ramalingam; Monarin Uervirojnangkoorn; Zhaoyou Wang; Adrian Mancuso; Frédéric Poitevin; Chun Hong Yoon
Journal:  J Appl Crystallogr       Date:  2022-07-15       Impact factor: 4.868

3.  Coherent amplification of X-ray scattering from meso-structures.

Authors:  Julien R Lhermitte; Aaron Stein; Cheng Tian; Yugang Zhang; Lutz Wiegart; Andrei Fluerasu; Oleg Gang; Kevin G Yager
Journal:  IUCrJ       Date:  2017-07-10       Impact factor: 4.769

  3 in total

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