Literature DB >> 18999303

Development and evaluation of a clinical note section header terminology.

Joshua C Denny1, Randolph A Miller, Kevin B Johnson, Anderson Spickard.   

Abstract

Clinical documentation is often expressed in natural language text, yet providers often use common organizations that segment these notes in sections, such as history of present illness or physical examination. We developed a hierarchical section header terminology, supporting mappings to LOINC and other vocabularies; it contained 1109 concepts and 4332 synonyms. Physicians evaluated it compared to LOINC and the Evaluation and Management billing schema using a randomly selected corpus of history and physical notes. Evaluated documents contained a median of 54 sections and 27 major sections. There were 16,196 total sections in the evaluation note corpus. The terminology contained 99.9% of the clinical sections; LOINC matched 77% of section header concepts and 20% of section header strings in those documents. The section terminology may enable better clinical note understanding and interoperability. Future development and integration into natural language processing systems is needed.

Entities:  

Mesh:

Year:  2008        PMID: 18999303      PMCID: PMC2656032     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  7 in total

1.  The HL7 Clinical Document Architecture.

Authors:  R H Dolin; L Alschuler; C Beebe; P V Biron; S L Boyer; D Essin; E Kimber; T Lincoln; J E Mattison
Journal:  J Am Med Inform Assoc       Date:  2001 Nov-Dec       Impact factor: 4.497

2.  Experience in implementing inpatient clinical note capture via a provider order entry system.

Authors:  S Trent Rosenbloom; Jonathan Grande; Antoine Geissbuhler; Randolph A Miller
Journal:  J Am Med Inform Assoc       Date:  2004-04-02       Impact factor: 4.497

3.  Automation of a problem list using natural language processing.

Authors:  Stephane Meystre; Peter J Haug
Journal:  BMC Med Inform Decis Mak       Date:  2005-08-31       Impact factor: 2.796

Review 4.  Interface terminologies: facilitating direct entry of clinical data into electronic health record systems.

Authors:  S Trent Rosenbloom; Randolph A Miller; Kevin B Johnson; Peter L Elkin; Steven H Brown
Journal:  J Am Med Inform Assoc       Date:  2006-02-24       Impact factor: 4.497

Review 5.  Desiderata for controlled medical vocabularies in the twenty-first century.

Authors:  J J Cimino
Journal:  Methods Inf Med       Date:  1998-11       Impact factor: 2.176

6.  Internist-1, an experimental computer-based diagnostic consultant for general internal medicine.

Authors:  R A Miller; H E Pople; J D Myers
Journal:  N Engl J Med       Date:  1982-08-19       Impact factor: 91.245

7.  A framework for comprehensive health terminology systems in the United States: development guidelines, criteria for selection, and public policy implications. ANSI Healthcare Informatics Standards Board Vocabulary Working Group and the Computer-Based Patient Records Institute Working Group on Codes and Structures.

Authors:  C G Chute; S P Cohn; J R Campbell
Journal:  J Am Med Inform Assoc       Date:  1998 Nov-Dec       Impact factor: 4.497

  7 in total
  30 in total

1.  Robust replication of genotype-phenotype associations across multiple diseases in an electronic medical record.

Authors:  Marylyn D Ritchie; Joshua C Denny; Dana C Crawford; Andrea H Ramirez; Justin B Weiner; Jill M Pulley; Melissa A Basford; Kristin Brown-Gentry; Jeffrey R Balser; Daniel R Masys; Jonathan L Haines; Dan M Roden
Journal:  Am J Hum Genet       Date:  2010-04-01       Impact factor: 11.025

2.  Tracking medical students' clinical experiences using natural language processing.

Authors:  Joshua C Denny; Lisa Bastarache; Elizabeth Ann Sastre; Anderson Spickard
Journal:  J Biomed Inform       Date:  2009-02-21       Impact factor: 6.317

3.  Modulators of normal electrocardiographic intervals identified in a large electronic medical record.

Authors:  Andrea H Ramirez; Jonathan S Schildcrout; Dana L Blakemore; Dan R Masys; Jill M Pulley; Melissa A Basford; Dan M Roden; Joshua C Denny
Journal:  Heart Rhythm       Date:  2010-10-29       Impact factor: 6.343

4.  MedEx: a medication information extraction system for clinical narratives.

Authors:  Hua Xu; Shane P Stenner; Son Doan; Kevin B Johnson; Lemuel R Waitman; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2010 Jan-Feb       Impact factor: 4.497

5.  Evaluation of a method to identify and categorize section headers in clinical documents.

Authors:  Joshua C Denny; Anderson Spickard; Kevin B Johnson; Neeraja B Peterson; Josh F Peterson; Randolph A Miller
Journal:  J Am Med Inform Assoc       Date:  2009-08-28       Impact factor: 4.497

6.  A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries.

Authors:  Min Jiang; Yukun Chen; Mei Liu; S Trent Rosenbloom; Subramani Mani; Joshua C Denny; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2011-04-20       Impact factor: 4.497

7.  Comparing content coverage in medical curriculum to trainee-authored clinical notes.

Authors:  Joshua C Denny; Peter Speltz; Raquel Maddox; Glenn Stein; Hua Xu; Anderson Spickard
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

8.  Automated Assessment of Medical Students' Clinical Exposures according to AAMC Geriatric Competencies.

Authors:  Yukun Chen; Jesse Wrenn; Hua Xu; Anderson Spickard; Ralf Habermann; James Powers; Joshua C Denny
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

9.  TagLine: Information Extraction for Semi-Structured Text in Medical Progress Notes.

Authors:  Dezon K Finch; James A McCart; Stephen L Luther
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

10.  A study of active learning methods for named entity recognition in clinical text.

Authors:  Yukun Chen; Thomas A Lasko; Qiaozhu Mei; Joshua C Denny; Hua Xu
Journal:  J Biomed Inform       Date:  2015-09-15       Impact factor: 6.317

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