Literature DB >> 18999206

From episodes of care to diagnosis codes: automatic text categorization for medico-economic encoding.

Patrick Ruch1, Julien Gobeilla, Imad Tbahritia, Antoine Geissbühlera.   

Abstract

We report on the design and evaluation of an original system to help assignment ICD (International Classification of Disease) codes to clinical narratives. The task is defined as a multi-class multi-document classification task. We combine a set of machine learning and data-poor methods to generate a single automatic text categorizer, which returns a ranked list of ICD codes. The combined ranking system currently obtains a precision of 75% at high ranks and a recall of about 63% for the top twenty returned codes for a theoretical upper bound of about 79% (inter-coder agreement). The performance of the data-poor classifier is weak, whereas the use of tempo-rally-typed contents such as anamnesis and prescription free text sections results in a statistically significant improvement.

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Mesh:

Year:  2008        PMID: 18999206      PMCID: PMC2655971     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  12 in total

1.  Medical document anonymization with a semantic lexicon.

Authors:  P Ruch; R H Baud; A M Rassinoux; P Bouillon; G Robert
Journal:  Proc AMIA Symp       Date:  2000

2.  UMLF: a unified medical lexicon for French.

Authors:  Pierre Zweigenbaum; Robert Baud; Anita Burgun; Fiammetta Namer; Eric Jarrousse; Natalia Grabar; Patrick Ruch; Franck Le Duff; Jean-François Forget; Magaly Douyère; Stéfan Darmoni
Journal:  Int J Med Inform       Date:  2005-03       Impact factor: 4.046

3.  Design of a Multi Dimensional Database for the Archimed DataWarehouse.

Authors:  Claudine Bréant; Gérald Thurler; François Borst; Antoine Geissbuhler
Journal:  Stud Health Technol Inform       Date:  2005

4.  Semi-automatic indexing of full text biomedical articles.

Authors:  Clifford W Gay; Mehmet Kayaalp; Alan R Aronson
Journal:  AMIA Annu Symp Proc       Date:  2005

5.  Quality of diagnosis and procedure coding in ICD-10 administrative data.

Authors:  Toni Henderson; Jennie Shepheard; Vijaya Sundararajan
Journal:  Med Care       Date:  2006-11       Impact factor: 2.983

Review 6.  Temporal reasoning with medical data--a review with emphasis on medical natural language processing.

Authors:  Li Zhou; George Hripcsak
Journal:  J Biomed Inform       Date:  2007-01-11       Impact factor: 6.317

7.  Automating the assignment of diagnosis codes to patient encounters using example-based and machine learning techniques.

Authors:  Serguei V S Pakhomov; James D Buntrock; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2006-06-23       Impact factor: 4.497

8.  An analysis of statistical term strength and its use in the indexing and retrieval of molecular biology texts.

Authors:  W J Wilbur; Y Yang
Journal:  Comput Biol Med       Date:  1996-05       Impact factor: 4.589

9.  Data-poor categorization and passage retrieval for gene ontology annotation in Swiss-Prot.

Authors:  Frédéric Ehrler; Antoine Geissbühler; Antonio Jimeno; Patrick Ruch
Journal:  BMC Bioinformatics       Date:  2005-05-24       Impact factor: 3.169

10.  Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction.

Authors:  Julien Gobeill; Imad Tbahriti; Frédéric Ehrler; Anaïs Mottaz; Anne-Lise Veuthey; Patrick Ruch
Journal:  BMC Bioinformatics       Date:  2008-04-11       Impact factor: 3.169

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  5 in total

1.  Can structured EHR data support clinical coding? A data mining approach.

Authors:  José Carlos Ferrão; Mónica Duarte Oliveira; Filipe Janela; Henrique M G Martins; Daniel Gartner
Journal:  Health Syst (Basingstoke)       Date:  2020-03-01

2.  An empirical evaluation of supervised learning approaches in assigning diagnosis codes to electronic medical records.

Authors:  Ramakanth Kavuluru; Anthony Rios; Yuan Lu
Journal:  Artif Intell Med       Date:  2015-05-15       Impact factor: 5.326

3.  Priority queuing models for hospital intensive care units and impacts to severe case patients.

Authors:  Matthew S Hagen; Jeffrey K Jopling; Timothy G Buchman; Eva K Lee
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

4.  Hospital burden of coronary artery disease: Trends of myocardial infarction and/or percutaneous coronary interventions in France 2009-2014.

Authors:  Jessica Pinaire; Jérôme Azé; Sandra Bringay; Guillaume Cayla; Paul Landais
Journal:  PLoS One       Date:  2019-05-02       Impact factor: 3.240

Review 5.  Deep Question Answering for protein annotation.

Authors:  Julien Gobeill; Arnaud Gaudinat; Emilie Pasche; Dina Vishnyakova; Pascale Gaudet; Amos Bairoch; Patrick Ruch
Journal:  Database (Oxford)       Date:  2015-09-16       Impact factor: 3.451

  5 in total

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