Literature DB >> 18998731

Studies on the mechanism of aldehyde oxidase and xanthine oxidase.

Joshua F Alfaro1, Jeffrey P Jones.   

Abstract

DFT calculations support a concerted mechanism for xanthine oxidase and aldehyde oxidase hydride displacement from the sp(2) carbon of 6-substituted 4-quinazolinones. The variations in transition state structure show that C-O bond formation is nearly complete in the transition state and the transition state changes are anti-Hammond with the C-H and C-O bond lengths being more product-like for the faster reactions. The C-O bond length in the transition state is around 90% formed. However, the C-H bond is only about 80% broken. This leads to a very tetrahedral transition state with an O-C-N angle of 109 degrees. Thus, while the mechanism is concerted, the antibonding orbital of the C-H bond that is broken is not directly attacked by the nucleophile and instead hydride displacement occurs after almost complete tetrahedral transition state formation. In support of this the C=N bond is lengthened in the transition state indicating that attack on the electrophilic carbon occurs by addition to the C=N bond with negative charge increasing on the nitrogen. Differences in experimental reaction rates are accurately reproduced by these calculations and tend to support this mechanism.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18998731      PMCID: PMC2765548          DOI: 10.1021/jo801053u

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  18 in total

1.  The crystal structure of xanthine oxidoreductase during catalysis: implications for reaction mechanism and enzyme inhibition.

Authors:  Ken Okamoto; Koji Matsumoto; Russ Hille; Bryan T Eger; Emil F Pai; Takeshi Nishino
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

2.  The reductive half-reaction of xanthine oxidase. Identification of spectral intermediates in the hydroxylation of 2-hydroxy-6-methylpurine.

Authors:  R B McWhirter; R Hille
Journal:  J Biol Chem       Date:  1991-12-15       Impact factor: 5.157

3.  Electronic probes of the mechanism of substrate oxidation by buttermilk xanthine oxidase: role of the active-site nucleophile in oxidation.

Authors:  E B Skibo; J H Gilchrist; C H Lee
Journal:  Biochemistry       Date:  1987-06-02       Impact factor: 3.162

4.  Zebularine metabolism by aldehyde oxidase in hepatic cytosol from humans, monkeys, dogs, rats, and mice: influence of sex and inhibitors.

Authors:  Raymond W Klecker; Richard L Cysyk; Jerry M Collins
Journal:  Bioorg Med Chem       Date:  2005-09-06       Impact factor: 3.641

5.  A theoretical study on the mechanism of the reductive half-reaction of xanthine oxidase.

Authors:  Xin-Hao Zhang; Yun-Dong Wu
Journal:  Inorg Chem       Date:  2005-03-07       Impact factor: 5.165

6.  Use of density functional calculations to predict the regioselectivity of drugs and molecules metabolized by aldehyde oxidase.

Authors:  Rhonda A Torres; Kenneth R Korzekwa; Daniel R McMasters; Christine M Fandozzi; Jeffrey P Jones
Journal:  J Med Chem       Date:  2007-08-25       Impact factor: 7.446

7.  Geometrical control of the active site electronic structure of pyranopterin enzymes by metal-dithiolate folding: aldehyde oxidase.

Authors:  Hemant K Joshi; John H Enemark
Journal:  J Am Chem Soc       Date:  2004-09-29       Impact factor: 15.419

8.  The reaction of xanthine oxidase with lumazine. Characterization of the reductive half-reaction.

Authors:  M D Davis; J S Olson; G Palmer
Journal:  J Biol Chem       Date:  1984-03-25       Impact factor: 5.157

9.  Electronic structure description of the cis-MoOS unit in models for molybdenum hydroxylases.

Authors:  Christian J Doonan; Nick D Rubie; Katrina Peariso; Hugh H Harris; Sushilla Z Knottenbelt; Graham N George; Charles G Young; Martin L Kirk
Journal:  J Am Chem Soc       Date:  2007-12-07       Impact factor: 15.419

10.  Energy-consistent relativistic pseudopotentials and correlation consistent basis sets for the 4d elements Y-Pd.

Authors:  Kirk A Peterson; Detlev Figgen; Michael Dolg; Hermann Stoll
Journal:  J Chem Phys       Date:  2007-03-28       Impact factor: 3.488

View more
  17 in total

1.  The first mammalian aldehyde oxidase crystal structure: insights into substrate specificity.

Authors:  Catarina Coelho; Martin Mahro; José Trincão; Alexandra T P Carvalho; Maria João Ramos; Mineko Terao; Enrico Garattini; Silke Leimkühler; Maria João Romão
Journal:  J Biol Chem       Date:  2012-09-27       Impact factor: 5.157

2.  Molybdenum enzymes in higher organisms.

Authors:  Russ Hille; Takeshi Nishino; Florian Bittner
Journal:  Coord Chem Rev       Date:  2011-05-01       Impact factor: 22.315

3.  A novel reaction mediated by human aldehyde oxidase: amide hydrolysis of GDC-0834.

Authors:  Jasleen K Sodhi; Susan Wong; Donald S Kirkpatrick; Lichuan Liu; S Cyrus Khojasteh; Cornelis E C A Hop; John T Barr; Jeffrey P Jones; Jason S Halladay
Journal:  Drug Metab Dispos       Date:  2015-04-06       Impact factor: 3.922

4.  Interspecies differences in the metabolism of methotrexate: An insight into the active site differences between human and rabbit aldehyde oxidase.

Authors:  Kanika V Choughule; Carolyn A Joswig-Jones; Jeffrey P Jones
Journal:  Biochem Pharmacol       Date:  2015-05-29       Impact factor: 5.858

5.  Why do most human liver cytosol preparations lack xanthine oxidase activity?

Authors:  John T Barr; Kanika V Choughule; Sahadev Nepal; Timothy Wong; Amarjit S Chaudhry; Carolyn A Joswig-Jones; Michael Zientek; Stephen C Strom; Erin G Schuetz; Kenneth E Thummel; Jeffrey P Jones
Journal:  Drug Metab Dispos       Date:  2014-01-15       Impact factor: 3.922

6.  Site-Directed Mutagenesis at the Molybdenum Pterin Cofactor Site of the Human Aldehyde Oxidase: Interrogating the Kinetic Differences Between Human and Cynomolgus Monkey.

Authors:  Armina Abbasi; Carolyn A Joswig-Jones; Jeffrey P Jones
Journal:  Drug Metab Dispos       Date:  2020-10-05       Impact factor: 3.922

7.  Enzyme Kinetics, Pharmacokinetics, and Inhibition of Aldehyde Oxidase.

Authors:  Erickson M Paragas; Kanika Choughule; Jeffrey P Jones; John T Barr
Journal:  Methods Mol Biol       Date:  2021

8.  Predicting intrinsic clearance for drugs and drug candidates metabolized by aldehyde oxidase.

Authors:  Jeffrey P Jones; Kenneth R Korzekwa
Journal:  Mol Pharm       Date:  2013-02-13       Impact factor: 4.939

Review 9.  Evolution, expression, and substrate specificities of aldehyde oxidase enzymes in eukaryotes.

Authors:  Mineko Terao; Enrico Garattini; Maria João Romão; Silke Leimkühler
Journal:  J Biol Chem       Date:  2020-03-06       Impact factor: 5.157

10.  In vitro oxidative metabolism of 6-mercaptopurine in human liver: insights into the role of the molybdoflavoenzymes aldehyde oxidase, xanthine oxidase, and xanthine dehydrogenase.

Authors:  Kanika V Choughule; Carlo Barnaba; Carolyn A Joswig-Jones; Jeffrey P Jones
Journal:  Drug Metab Dispos       Date:  2014-05-13       Impact factor: 3.922

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.