Literature DB >> 18997330

Expression, crystallization and preliminary X-ray crystallographic analysis of Xoo2316, a predicted 6-phosphogluconolactonase, from Xanthomonas oryzae pv. oryzae.

Myoung-Ki Hong1, Jin-Kwang Kim, Hyesoon Kim, Junho Jung, Yeh-Jin Ahn, Jeong-Gu Kim, Byoung-Moo Lee, Lin-Woo Kang.   

Abstract

Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial blight, which is one of the most devastating diseases of rice (Oryza sativa L.) in many rice-growing countries. The coding sequence of Xoo2316 (a predicted 6-phosphogluconolactonase; 6PGL) from Xoo was cloned and expressed in Escherichia coli. 6PGL is an enzyme that is involved in the second step of the pentose phosphate pathway, which is essential for the synthesis of nucleotide sugars and NADPH, the main source of reducing power. The protein was purified and crystallized in order to elucidate the molecular basis for its enzymatic reaction. Native crystals diffracted to 2.4 A resolution and belonged to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 40.0, b = 65.1, c = 78.8 A. A monomer exists in the asymmetric unit with a corresponding V(M) of 1.93 A(3) Da(-1) and a solvent content of 36.5%.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18997330      PMCID: PMC2581699          DOI: 10.1107/S1744309108025852

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  8 in total

Review 1.  Enzymes of carbohydrate metabolism as potential drug targets.

Authors:  F R Opperdoes; P A Michels
Journal:  Int J Parasitol       Date:  2001-05-01       Impact factor: 3.981

2.  Genomic approaches to antibacterial discovery.

Authors:  David J Payne; Michael N Gwynn; David J Holmes; Marty Rosenberg
Journal:  Methods Mol Biol       Date:  2004

Review 3.  Drugs for bad bugs: confronting the challenges of antibacterial discovery.

Authors:  David J Payne; Michael N Gwynn; David J Holmes; David L Pompliano
Journal:  Nat Rev Drug Discov       Date:  2006-12-08       Impact factor: 84.694

Review 4.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice.

Authors:  Byoung-Moo Lee; Young-Jin Park; Dong-Suk Park; Hee-Wan Kang; Jeong-Gu Kim; Eun-Sung Song; In-Cheol Park; Ung-Han Yoon; Jang-Ho Hahn; Bon-Sung Koo; Gil-Bok Lee; Hyungtae Kim; Hyun-Seok Park; Kyong-Oh Yoon; Jeong-Hyun Kim; Chol-hee Jung; Nae-Hyung Koh; Jeong-Sun Seo; Seung-Joo Go
Journal:  Nucleic Acids Res       Date:  2005-01-26       Impact factor: 16.971

7.  Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service.

Authors:  Jeong-Gu Kim; Daeui Park; Byoung-Chul Kim; Seong-Woong Cho; Yeong Tae Kim; Young-Jin Park; Hee Jung Cho; Hyunseok Park; Ki-Bong Kim; Kyong-Oh Yoon; Soo-Jun Park; Byoung-Moo Lee; Jong Bhak
Journal:  BMC Bioinformatics       Date:  2008-01-24       Impact factor: 3.169

8.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.