Literature DB >> 18996470

Rapid and cost effective genotyping method for polymorphisms in PPARG, PPARGC1 and TCF7L2 genes.

Viera Habalová1, Lucia Klimcáková, Jozef Zidzik, Ivan Tkác.   

Abstract

Polymorphisms (rs1801282, rs8192678, rs7903146) of peroxisome proliferator-activated receptor gamma (PPARG), peroxisome proliferator-activated receptor gamma coactivator-1 alpha (PPARGC1A) and transcription factor 7-like 2 (TCF7L2) have recently been associated with different diseases, mainly type 2 diabetes. An assay using unlabeled probes and the LightCycler or Rotor-Gene instruments was developed for genotyping of these three polymorphisms. Asymmetric polymerase chain reaction was used, followed by melting analysis of the unlabeled probe/ssDNA amplicon duplex. Samples with the target genotypes were accurately detected and easily distinguishable. Thus, genotyping using unlabeled probes is a rapid, accurate and cost effective closed-tube method. These assays demonstrated 100% specificity and sensitivity for the identification of selected polymorphisms in PPARG, PPARGC1A and TCF7L2 genes.

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Year:  2008        PMID: 18996470     DOI: 10.1016/j.mcp.2008.10.001

Source DB:  PubMed          Journal:  Mol Cell Probes        ISSN: 0890-8508            Impact factor:   2.365


  7 in total

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Journal:  J Mol Diagn       Date:  2009-07-30       Impact factor: 5.568

2.  Detection of Two Drug-Resistance Mutants of the Cytomegalovirus by High-Resolution Melting Analysis.

Authors:  Xiao-Fan Chen; Tian-Run Li; Hong Yang; Yong Shao; Jie Zhang; Wei Zhang; Bo Yu; Zhun Wei; Bo Wu; Lin Yu
Journal:  J Clin Lab Anal       Date:  2015-05-13       Impact factor: 2.352

3.  Prevalence of Plasmodium falciparum resistance markers to sulfadoxine-pyrimethamine among pregnant women receiving intermittent preventive treatment for malaria in Uganda.

Authors:  Anthony K Mbonye; Josephine Birungi; Stephanie K Yanow; Sandra Shokoples; Samuel Malamba; Michael Alifrangis; Pascal Magnussen
Journal:  Antimicrob Agents Chemother       Date:  2015-06-29       Impact factor: 5.191

4.  Genetic variations in transcription factor 7-like 2 (TCF7L2) gene: association of TCF7L2 rs12255372(G/T) or rs7903146(C/T) with breast cancer risk and clinico-pathological parameters.

Authors:  R Naidu; C H Yip; N A M Taib
Journal:  Med Oncol       Date:  2011-02-08       Impact factor: 3.064

5.  High-throughput genotyping of single nucleotide polymorphisms in the Plasmodium falciparum dhfr gene by asymmetric PCR and melt-curve analysis.

Authors:  Rochelle E Cruz; Sandra E Shokoples; Dammika P Manage; Stephanie K Yanow
Journal:  J Clin Microbiol       Date:  2010-07-14       Impact factor: 5.948

6.  PPARɣ2, aldose reductase, and TCF7L2 gene polymorphisms: relation to diabetes mellitus.

Authors:  Hadeel Ahmed Shawki; Ekbal M Abo-Hashem; Magdy M Youssef; Maha Shahin; Rasha Elzehery
Journal:  J Diabetes Metab Disord       Date:  2022-01-03

7.  Development and inter-laboratory validation of unlabeled probe melting curve analysis for detection of JAK2 V617F mutation in polycythemia vera.

Authors:  Zhiyuan Wu; Hong Yuan; Xinju Zhang; Weiwei Liu; Jinhua Xu; Wei Zhang; Ming Guan
Journal:  PLoS One       Date:  2011-10-20       Impact factor: 3.240

  7 in total

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