Literature DB >> 18988272

Investigations of an O-H...S hydrogen bond via Car-Parrinello and path integral molecular dynamics.

Aneta Jezierska1, Jarosław J Panek.   

Abstract

The presence of intramolecular hydrogen bonds influences the binding energy, tautomeric equilibrium, and spectroscopic properties of various classes of organic molecules. This article discusses the O-H...S bridge, one of the less commonly investigated types of intramolecular interactions. 3-mercapto-1,3-diphenylprop-2-en-1-one was considered as the model structure. This compound exhibits photochromic properties. Car-Parrinello molecular dynamics (CPMD) was applied to investigate the spectroscopic and molecular properties of this compound in the gas phase and in the solid state. The second part of the study is devoted to the effects of the quantization of nuclear motions, with special attention to the O-H...S moiety. Path integral molecular dynamics (PIMD) of the molecular crystal of 3-mercapto-1,3-diphenylprop-2-en-1-one was carried out for this purpose. The employment of this fully quantum mechanical technique enables one to study, in a time-averaged sense, the zero-point motion important for flat potential energy surfaces. Finally, the potentials of mean force (Pmfs) were calculated from the CPMD and PIMD data obtained for the solid-state calculations. The effect of including quantum nuclear motion was investigated. In the studied compound, quantum effects shortened the H-bridge and provided a better description of the free energy minimum. The computational results place this uncommon intramolecular H-bonding among the class of strong hydrogen bonds with large red shifts of O-H stretching modes, which correspond well with previously presented experimental data in the literature concerning this structure. 2008 Wiley Periodicals, Inc.

Entities:  

Year:  2009        PMID: 18988272     DOI: 10.1002/jcc.21158

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  3 in total

1.  Flexibility of a biotinylated ligand in artificial metalloenzymes based on streptavidin--an insight from molecular dynamics simulations with classical and ab initio force fields.

Authors:  Jarosław J Panek; Thomas R Ward; Aneta Jezierska-Mazzarello; Marjana Novic
Journal:  J Comput Aided Mol Des       Date:  2010-06-05       Impact factor: 3.686

2.  N-H⋯O versus O-H⋯O: density functional calculation and first principle molecular dynamics study on a quinoline-2-carboxamide N-oxide.

Authors:  Aneta Jezierska
Journal:  J Mol Model       Date:  2015-02-19       Impact factor: 1.810

3.  Sensitivity of Intra- and Intermolecular Interactions of Benzo[h]quinoline from Car-Parrinello Molecular Dynamics and Electronic Structure Inspection.

Authors:  Jarosław J Panek; Joanna Zasada; Bartłomiej M Szyja; Beata Kizior; Aneta Jezierska
Journal:  Int J Mol Sci       Date:  2021-05-14       Impact factor: 5.923

  3 in total

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