Literature DB >> 18978045

It is computation time for bacteriology!

Igor B Zhulin1.   

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Year:  2008        PMID: 18978045      PMCID: PMC2612415          DOI: 10.1128/JB.01491-08

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


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  14 in total

1.  Targeted access to the genomes of low-abundance organisms in complex microbial communities.

Authors:  Mircea Podar; Carl B Abulencia; Marion Walcher; Don Hutchison; Karsten Zengler; Joseph A Garcia; Trevin Holland; David Cotton; Loren Hauser; Martin Keller
Journal:  Appl Environ Microbiol       Date:  2007-03-16       Impact factor: 4.792

2.  A novel class of modular transporters for vitamins in prokaryotes.

Authors:  Dmitry A Rodionov; Peter Hebbeln; Aymerick Eudes; Josy ter Beek; Irina A Rodionova; Guus B Erkens; Dirk J Slotboom; Mikhail S Gelfand; Andrei L Osterman; Andrew D Hanson; Thomas Eitinger
Journal:  J Bacteriol       Date:  2008-10-17       Impact factor: 3.490

3.  A procedure for highly specific, sensitive, and unbiased whole-genome amplification.

Authors:  Xinghua Pan; Alexander Eckehart Urban; Dean Palejev; Vincent Schulz; Fabian Grubert; Yiping Hu; Michael Snyder; Sherman M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-01       Impact factor: 11.205

Review 4.  Discovering functional novelty in metagenomes: examples from light-mediated processes.

Authors:  Amoolya H Singh; Tobias Doerks; Ivica Letunic; Jeroen Raes; Peer Bork
Journal:  J Bacteriol       Date:  2008-10-10       Impact factor: 3.490

Review 5.  Molecular eco-systems biology: towards an understanding of community function.

Authors:  Jeroen Raes; Peer Bork
Journal:  Nat Rev Microbiol       Date:  2008-09       Impact factor: 60.633

6.  The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

Authors:  Shibu Yooseph; Granger Sutton; Douglas B Rusch; Aaron L Halpern; Shannon J Williamson; Karin Remington; Jonathan A Eisen; Karla B Heidelberg; Gerard Manning; Weizhong Li; Lukasz Jaroszewski; Piotr Cieplak; Christopher S Miller; Huiying Li; Susan T Mashiyama; Marcin P Joachimiak; Christopher van Belle; John-Marc Chandonia; David A Soergel; Yufeng Zhai; Kannan Natarajan; Shaun Lee; Benjamin J Raphael; Vineet Bafna; Robert Friedman; Steven E Brenner; Adam Godzik; David Eisenberg; Jack E Dixon; Susan S Taylor; Robert L Strausberg; Marvin Frazier; J Craig Venter
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

7.  Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria.

Authors:  Alexey E Kazakov; Dmitry A Rodionov; Eric Alm; Adam Paul Arkin; Inna Dubchak; Mikhail S Gelfand
Journal:  J Bacteriol       Date:  2008-09-26       Impact factor: 3.490

Review 8.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

9.  Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences.

Authors:  L M Iyer; L Aravind; P Bork; K Hofmann; A R Mushegian; I B Zhulin; E V Koonin
Journal:  Genome Biol       Date:  2001-11-13       Impact factor: 13.583

10.  The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.

Authors:  Konstantinos Liolios; Konstantinos Mavromatis; Nektarios Tavernarakis; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2007-11-02       Impact factor: 16.971

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  3 in total

Review 1.  Ordered orthology as a tool in prokaryotic evolutionary inference.

Authors:  Sagi Snir
Journal:  Mob Genet Elements       Date:  2015-12-30

2.  Two essential arginine residues in the T components of energy-coupling factor transporters.

Authors:  Olivia Neubauer; Anja Alfandega; Janna Schoknecht; Ulrich Sternberg; Anne Pohlmann; Thomas Eitinger
Journal:  J Bacteriol       Date:  2009-08-28       Impact factor: 3.490

3.  Measurements versus understanding: the (metabol)omics dilemma.

Authors:  Uwe Sauer
Journal:  Microb Biotechnol       Date:  2009-03       Impact factor: 5.813

  3 in total

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