Literature DB >> 18977048

Engineering microbes with synthetic biology frameworks.

Effendi Leonard1, David Nielsen, Kevin Solomon, Kristala Jones Prather.   

Abstract

Typically, the outcome of biologically engineered unit operations cannot be controlled a priori due to the incorporation of ad hoc design into complex natural systems. To mitigate this problem, synthetic biology presents a systematic approach to standardizing biological components for the purpose of increasing their programmability and robustness when assembled with the aim to achieve novel biological functions. A complex engineered biological system using only standardized biological components is yet to exist. Nevertheless, current attempts to create and to implement modular, standardized biological components pave the way for the future creation of highly predictable artificial biological systems. Although synthetic biology frameworks can be applied to any biological engineering endeavor, this article will focus on providing a brief overview of advances in the field and its recent utilization for the engineering of microbes.

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Year:  2008        PMID: 18977048     DOI: 10.1016/j.tibtech.2008.08.003

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  16 in total

1.  Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control.

Authors:  Effendi Leonard; Parayil Kumaran Ajikumar; Kelly Thayer; Wen-Hai Xiao; Jeffrey D Mo; Bruce Tidor; Gregory Stephanopoulos; Kristala L J Prather
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

2.  Near-real-time analysis of the phenotypic responses of Escherichia coli to 1-butanol exposure using Raman Spectroscopy.

Authors:  Theresah N K Zu; Ahmad I M Athamneh; Robert S Wallace; Eva Collakova; Ryan S Senger
Journal:  J Bacteriol       Date:  2014-08-25       Impact factor: 3.490

3.  Expanding the repertoire of biofuel alternatives through metabolic pathway evolution.

Authors:  Mattheos A G Koffas
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-21       Impact factor: 11.205

Review 4.  The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Authors:  Gil Alterovitz; Taro Muso; Marco F Ramoni
Journal:  Brief Bioinform       Date:  2009-11-11       Impact factor: 11.622

5.  Fluorescence-Activated Droplet Sorting for Single-Cell Directed Evolution.

Authors:  Derek Vallejo; Ali Nikoomanzar; Brian M Paegel; John C Chaput
Journal:  ACS Synth Biol       Date:  2019-05-23       Impact factor: 5.110

Review 6.  Engineering microbial factories for synthesis of value-added products.

Authors:  Jing Du; Zengyi Shao; Huimin Zhao
Journal:  J Ind Microbiol Biotechnol       Date:  2011-04-28       Impact factor: 3.346

Review 7.  High-cell-density culture strategies for polyhydroxyalkanoate production: a review.

Authors:  Jaciane Lutz Ienczak; Willibaldo Schmidell; Gláucia Maria Falcão de Aragão
Journal:  J Ind Microbiol Biotechnol       Date:  2013-02-28       Impact factor: 3.346

8.  A man-made ATP-binding protein evolved independent of nature causes abnormal growth in bacterial cells.

Authors:  Joshua M Stomel; James W Wilson; Megan A León; Phillip Stafford; John C Chaput
Journal:  PLoS One       Date:  2009-10-08       Impact factor: 3.240

9.  Design and testing of a synthetic biology framework for genetic engineering of Corynebacterium glutamicum.

Authors:  Pablo Ravasi; Salvador Peiru; Hugo Gramajo; Hugo G Menzella
Journal:  Microb Cell Fact       Date:  2012-11-07       Impact factor: 5.328

10.  Exploiting genomic knowledge in optimising molecular breeding programmes: algorithms from evolutionary computing.

Authors:  Steve O'Hagan; Joshua Knowles; Douglas B Kell
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

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