Literature DB >> 18977046

Mining bioprocess data: opportunities and challenges.

Salim Charaniya1, Wei-Shou Hu, George Karypis.   

Abstract

Modern biotechnology production plants are equipped with sophisticated control, data logging and archiving systems. These data hold a wealth of information that might shed light on the cause of process outcome fluctuations, whether the outcome of concern is productivity or product quality. These data might also provide clues on means to further improve process outcome. Data-driven knowledge discovery approaches can potentially unveil hidden information, predict process outcome, and provide insights on implementing robust processes. Here we describe the steps involved in process data mining with an emphasis on recent advances in data mining methods pertinent to the unique characteristics of biological process data.

Mesh:

Year:  2008        PMID: 18977046     DOI: 10.1016/j.tibtech.2008.09.003

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  6 in total

1.  High-throughput workflow for monitoring and mining bioprocess data and its application to inferring the physiological response of Escherichia coli to perturbations.

Authors:  Stéphanie Heux; Benjamin Philippe; Jean-Charles Portais
Journal:  Appl Environ Microbiol       Date:  2011-08-12       Impact factor: 4.792

2.  Towards the Development of Digital Twins for the Bio-manufacturing Industry.

Authors:  Carina L Gargalo; Simoneta Caño de Las Heras; Mark Nicholas Jones; Isuru Udugama; Seyed Soheil Mansouri; Ulrich Krühne; Krist V Gernaey
Journal:  Adv Biochem Eng Biotechnol       Date:  2021       Impact factor: 2.635

3.  Discerning key parameters influencing high productivity and quality through recognition of patterns in process data.

Authors:  Huong Le; Marlene Castro-Melchor; Christian Hakemeyer; Christine Jung; Berthold Szperalski; George Karypis; Wei-Shou Hu
Journal:  BMC Proc       Date:  2011-11-22

4.  A reproducible approach to high-throughput biological data acquisition and integration.

Authors:  Daniela Börnigen; Yo Sup Moon; Xochitl C Morgan; Wendy S Garrett; Gholamali Rahnavard; Levi Waldron; Lauren McIver; Afrah Shafquat; Eric A Franzosa; Larissa Miropolsky; Christopher Sweeney; Curtis Huttenhower
Journal:  PeerJ       Date:  2015-03-31       Impact factor: 2.984

Review 5.  Investigating biocomplexity through the agent-based paradigm.

Authors:  Himanshu Kaul; Yiannis Ventikos
Journal:  Brief Bioinform       Date:  2013-11-12       Impact factor: 11.622

6.  Model-Based Methods in the Biopharmaceutical Process Lifecycle.

Authors:  Paul Kroll; Alexandra Hofer; Sophia Ulonska; Julian Kager; Christoph Herwig
Journal:  Pharm Res       Date:  2017-11-22       Impact factor: 4.200

  6 in total

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