Literature DB >> 18974263

Defensins and the dynamic genome: what we can learn from structural variation at human chromosome band 8p23.1.

Edward J Hollox1, John C K Barber, Anthony J Brookes, John A L Armour.   

Abstract

Over the past four years, genome-wide studies have uncovered numerous examples of structural variation in the human genome. This includes structural variation that changes copy number, such as deletion and duplication, and structural variation that does not change copy number, such as orientation and positional polymorphism. One region that contains all these types of variation spans the chromosome band 8p23.1. This region has been studied in some depth, and the focus of this review is to examine our current understanding of the variation of this region. We also consider whether this region is a good model for other structurally variable regions in the genome and what the implications of this variation are for clinical studies. Finally, we discuss the bioinformatics challenges raised, discuss the evolution of the region, and suggest some future priorities for structural variation research.

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Year:  2008        PMID: 18974263     DOI: 10.1101/gr.080945.108

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  43 in total

1.  Measurement methods and accuracy in copy number variation: failure to replicate associations of beta-defensin copy number with Crohn's disease.

Authors:  Marian C Aldhous; Suhaili Abu Bakar; Natalie J Prescott; Raquel Palla; Kimberley Soo; John C Mansfield; Christopher G Mathew; Jack Satsangi; John A L Armour
Journal:  Hum Mol Genet       Date:  2010-09-21       Impact factor: 6.150

2.  A potential relationship among beta-defensins haplotype, SOX7 duplication and cardiac defects.

Authors:  Fei Long; Xike Wang; Shaohai Fang; Yuejuan Xu; Kun Sun; Sun Chen; Rang Xu
Journal:  PLoS One       Date:  2013-08-29       Impact factor: 3.240

Review 3.  Inflammatory bowel disease: an impaired barrier disease.

Authors:  Simon Jäger; Eduard F Stange; Jan Wehkamp
Journal:  Langenbecks Arch Surg       Date:  2012-11-18       Impact factor: 3.445

4.  Human β-defensin 3 induces STAT1 phosphorylation, tyrosine phosphatase activity, and cytokine synthesis in T cells.

Authors:  Jeffrey P Meisch; Ryan M Vogel; Daniela M Schlatzer; Xiaolin Li; Mark R Chance; Alan D Levine
Journal:  J Leukoc Biol       Date:  2013-06-26       Impact factor: 4.962

5.  Genome-wide amplification of proviral sequences reveals new polymorphic HERV-K(HML-2) proviruses in humans and chimpanzees that are absent from genome assemblies.

Authors:  Catriona M Macfarlane; Richard M Badge
Journal:  Retrovirology       Date:  2015-04-28       Impact factor: 4.602

6.  The adult boar testicular and epididymal transcriptomes.

Authors:  Benoît Guyonnet; Guillemette Marot; Jean-Louis Dacheux; Marie-José Mercat; Sandrine Schwob; Florence Jaffrézic; Jean-Luc Gatti
Journal:  BMC Genomics       Date:  2009-08-07       Impact factor: 3.969

7.  The DUB/USP17 deubiquitinating enzymes: a gene family within a tandemly repeated sequence, is also embedded within the copy number variable beta-defensin cluster.

Authors:  James F Burrows; Christopher J Scott; James A Johnston
Journal:  BMC Genomics       Date:  2010-04-19       Impact factor: 3.969

8.  8p23.1 duplication syndrome differentiated from copy number variation of the defensin cluster at prenatal diagnosis in four new families.

Authors:  John Ck Barber; Dave Bunyan; Merryl Curtis; Denise Robinson; Susanne Morlot; Anette Dermitzel; Thomas Liehr; Claudia Alves; Joana Trindade; Ana I Paramos; Clare Cooper; Kevin Ocraft; Emma-Jane Taylor; Viv K Maloney
Journal:  Mol Cytogenet       Date:  2010-02-18       Impact factor: 2.009

9.  Recurrent copy number variants associated with bronchopulmonary dysplasia.

Authors:  Ausaf Ahmad; Soumyaroop Bhattacharya; Arthi Sridhar; Anwar M Iqbal; Thomas J Mariani
Journal:  Pediatr Res       Date:  2016-03-14       Impact factor: 3.756

10.  Relevance of α-defensins (HNP1-3) and defensin β-1 in diabetes.

Authors:  Balázs Csaba Németh; Tamás Várkonyi; Ferenc Somogyvári; Csaba Lengyel; Katalin Fehértemplomi; Szabolcs Nyiraty; Péter Kempler; Yvette Mándi
Journal:  World J Gastroenterol       Date:  2014-07-21       Impact factor: 5.742

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