Literature DB >> 18971623

New insights into autophagy using a multiple knockout strain.

Yang Cao1, Daniel J Klionsky.   

Abstract

Not only is autophagy the major intracellular pathway for degradation and recycling of long-lived proteins and organelles, it is also involved in both the pathogenesis and prevention of many human diseases. Much progress has been made on the identification and characterization of AuTophaGy-related (ATG) genes, in yeast and in mammals. However, our understanding of the molecular mechanisms of autophagy remains quite limited, far from enough to harness autophagy for therapeutic applications. To better understand the molecular mechanisms, we took a unique and novel approach to study autophagy in yeast. We generated a multiple knockout Saccharomyces cerevisiae strain with 24 ATG genes deleted, and determined the minimum requirements for different aspects of autophagy. Our data also provided us with new insights into autophagy, different from those obtained from in vitro analyses. In this addendum, we briefly discuss our findings and consider fields where this multiple knockout strain can be of potential use.

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Year:  2008        PMID: 18971623      PMCID: PMC2933662          DOI: 10.4161/auto.6962

Source DB:  PubMed          Journal:  Autophagy        ISSN: 1554-8627            Impact factor:   16.016


  20 in total

1.  Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.

Authors:  N Mizushima; T Noda; Y Ohsumi
Journal:  EMBO J       Date:  1999-07-15       Impact factor: 11.598

2.  Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway.

Authors:  S V Scott; J Guan; M U Hutchins; J Kim; D J Klionsky
Journal:  Mol Cell       Date:  2001-06       Impact factor: 17.970

3.  Mechanism of cargo selection in the cytoplasm to vacuole targeting pathway.

Authors:  Takahiro Shintani; Wei-Pang Huang; Per E Stromhaug; Daniel J Klionsky
Journal:  Dev Cell       Date:  2002-12       Impact factor: 12.270

4.  The molecular machinery of autophagy: unanswered questions.

Authors:  Daniel J Klionsky
Journal:  J Cell Sci       Date:  2005-01-01       Impact factor: 5.285

5.  Atg11 links cargo to the vesicle-forming machinery in the cytoplasm to vacuole targeting pathway.

Authors:  Tomohiro Yorimitsu; Daniel J Klionsky
Journal:  Mol Biol Cell       Date:  2005-01-19       Impact factor: 4.138

6.  A ubiquitin-like system mediates protein lipidation.

Authors:  Y Ichimura; T Kirisako; T Takao; Y Satomi; Y Shimonishi; N Ishihara; N Mizushima; I Tanida; E Kominami; M Ohsumi; T Noda; Y Ohsumi
Journal:  Nature       Date:  2000-11-23       Impact factor: 49.962

7.  A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast.

Authors:  U Gueldener; J Heinisch; G J Koehler; D Voss; J H Hegemann
Journal:  Nucleic Acids Res       Date:  2002-03-15       Impact factor: 16.971

8.  In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy.

Authors:  Yoshinobu Ichimura; Yuko Imamura; Kazuo Emoto; Masato Umeda; Takeshi Noda; Yoshinori Ohsumi
Journal:  J Biol Chem       Date:  2004-07-23       Impact factor: 5.157

9.  A protein conjugation system essential for autophagy.

Authors:  N Mizushima; T Noda; T Yoshimori; Y Tanaka; T Ishii; M D George; D J Klionsky; M Ohsumi; Y Ohsumi
Journal:  Nature       Date:  1998-09-24       Impact factor: 49.962

10.  Membrane recruitment of Aut7p in the autophagy and cytoplasm to vacuole targeting pathways requires Aut1p, Aut2p, and the autophagy conjugation complex.

Authors:  J Kim; W P Huang; D J Klionsky
Journal:  J Cell Biol       Date:  2001-01-08       Impact factor: 10.539

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  6 in total

1.  Autophagy and UPR in alpha-crystallin mutant knock-in mouse models of hereditary cataracts.

Authors:  Usha P Andley; Joshua W Goldman
Journal:  Biochim Biophys Acta       Date:  2015-06-11

2.  Mutations in the ubiquitin-binding domain of OPTN/optineurin interfere with autophagy-mediated degradation of misfolded proteins by a dominant-negative mechanism.

Authors:  Wen-Chuan Shen; Huei-Ying Li; Guang-Chao Chen; Yijuang Chern; Pang-Hsien Tu
Journal:  Autophagy       Date:  2015-04-03       Impact factor: 16.016

3.  p62 expression and autophagy in αB-crystallin R120G mutant knock-in mouse model of hereditary cataract.

Authors:  Jonathan A Wignes; Joshua W Goldman; Conrad C Weihl; Matthew G Bartley; Usha P Andley
Journal:  Exp Eye Res       Date:  2013-07-18       Impact factor: 3.467

4.  A multiple ATG gene knockout strain for yeast two-hybrid analysis.

Authors:  Yang Cao; Usha Nair; Kyoko Yasumura-Yorimitsu; Daniel J Klionsky
Journal:  Autophagy       Date:  2009-07-10       Impact factor: 16.016

5.  Spatial control of avidity regulates initiation and progression of selective autophagy.

Authors:  David M Hollenstein; Mariya Licheva; Nicole Konradi; David Schweida; Hector Mancilla; Muriel Mari; Fulvio Reggiori; Claudine Kraft
Journal:  Nat Commun       Date:  2021-12-10       Impact factor: 14.919

6.  Dimerization-dependent membrane tethering by Atg23 is essential for yeast autophagy.

Authors:  Wayne D Hawkins; Kelsie A Leary; Devika Andhare; Hana Popelka; Daniel J Klionsky; Michael J Ragusa
Journal:  Cell Rep       Date:  2022-04-19       Impact factor: 9.995

  6 in total

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