| Literature DB >> 18955307 |
Ravikumar Aalinkeel1, Zihua Hu, Bindukumar B Nair, Donald E Sykes, Jessica L Reynolds, Supriya D Mahajan, Stanley A Schwartz.
Abstract
Phytochemicals are dietary phytoestrogens that may play a role in prostate cancer prevention. Forty percent of Americans use complementary and alternative medicines (CAM) for disease prevention and therapy. Ashwagandha (Withania somnifera) contains flavonoids and active ingredients like alkaloids and steroidal lactones which are called 'Withanolides'. We hypothesize that the immunomodulatory and anti-inflammatory properties of Ashwagandha might contribute to its overall effectiveness as an anti-carcinogenic agent. The goal of our study was gain insight into the general biological and molecular functions and immunomodulatory processes that are altered as a result of Ashwagandha treatment in prostate cancer cells, and to identify the key signaling mechanisms that are involved in the regulation of these physiological effects using genomic microarray analysis in conjunction with quantitative real-time PCR and western blot analysis. Ashwagandha treatment significantly downregulated the gene and protein expression of proinflammatory cytokines IL-6, IL-1β, chemokine IL-8, Hsp70 and STAT-2, while a reciprocal upregulation was observed in gene and protein expression of p38 MAPK, PI3K, caspase 6, Cyclin D and c-myc. Furthermore, Ashwagandha treatment significantly modulated the JAK-STAT pathway which regulates both the apoptosis process as well as the MAP kinase signaling. These studies outline several functionally important classes of genes, which are associated with immune response, signal transduction, cell signaling, transcriptional regulation, apoptosis and cell cycle regulation and provide insight into the molecular signaling mechanisms that are modulated by Ashwagandha, thereby highlighting the use of this bioflavanoid as effective chemopreventive agent relevant to prostate cancer progression.Entities:
Year: 2008 PMID: 18955307 PMCID: PMC2862933 DOI: 10.1093/ecam/nem184
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.629
Figure 1.Ashwagandha treatment inhibits cell proliferation in PC-3 cells. Results show that treatment with Ashwagandha significantly decreased cell proliferation. Data are the mean ± SD of three separate experiments done in triplicate. Statistical significance was determined by ANOVA.
Figure 2.Distribution of differentially expressed genes shown as a scatter plot representation of the average log2 ratio between normal and Ashwagandha-treated PC-3 cells for the 249 genes. Statistically significant genes (P-value < 0.01) identified by two-step analyses of t-test and SAM are shown in color, including down-regulated genes (in grey) and up-regulated genes (in black). Dashed lines indicate two-fold changes.
Functional classification of significantly modulated genes
| Gene Acession no | Gene nomenclature | Physiological function | Fold change in gene expression | |
|---|---|---|---|---|
| Cell cycle regulation | ||||
| AI340905 | Cyclin D3 | D-type cyclins are essential for progression from G1 to S-phase. They bind to and activate both CDK4 and CDK6. | 1.32 | ↑ |
| AA489042 | Cell division cycle 2-like 5 | Cell division controller | 1.09 | ↑ |
| AA704459 | Chromatin assembly factor 1, subunit A (p150) | One of the replication-coupled assembly factors involved in the reconstitution of S-phase chromatin | 0.85 | ↓ |
| AA450265 | Proliferating cell nuclear antigen | PCNA gene is induced by p53 and plays a key role in the control of eukaryotic DNA replication | 0.86 | ↓ |
| Regulation of apoptosis | ||||
| AA626710 | Caspase 6 | Apoptosis-related cysteine protease | 1.21 | ↑ |
| AA453766 | CASP8 and FADD-like apoptosis regulator | A caspase-like molecule known to bind to Fas-associated protein with death domain | 0.87 | ↓ |
| Modulation of stress proteins | ||||
| AA456298 | H2B histone family, member Q | Basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes | 1.41 | ↑ |
| AI276745 | Prostaglandin E receptor 2 | PGE( | 1.25 | ↑ |
| AA398410 | Heat shock transcription factor 2 binding protein | Heat-shock transcription factors (HSFs) bind to heat-shock elements (HSE) that are promoter sites for heat-shock proteins; important in differentiation and development | 1.24 | ↑ |
| H50114 | Glutamate receptor, ionotropic, N-methyl D-aspartate 2C | Regulates NMDA receptor and cell trafficking and ion channel properties | 1.23 | ↑ |
| AA620511 | Heat shock 70kD protein 8 | Molecular chaperone. | 0.91 | ↓ |
| R33642 | Glutathione S-transferase pi | GSTs bind flavonoid natural products in the cytosol prior to their deposition in the vacuole; are components of ultraviolet-inducible cell signalling pathways and are potential regulators of apoptosis; cell survival by GST-P is due to alleviation of oxidative stress and/or JNK activition | 0.87 | ↓ |
| Cytokines and chemokine regulation | ||||
| AA128153 | Interleukin 1 receptor-like 1 | Receptor for interleukin-33 (IL-33), its stimulation recruits MYD88, IRAK1, IRAK4, and TRAF6, followed by phosphorylation of MAPK3/ERK1 and/or MAPK1/ERK2, MAPK14, and MAPK8 | 1.30 | ↑ |
| AA015914 | Fibroblast growth factor 1 (acidic) | Potent mitogen and is involved in the regulation of key cellular process such as angiogenesis, differentiation, and morphogenesis | 1.25 | ↑ |
| AA630120 | Vascular endothelial growth factor B | Up-regulation of urokinase Plasminogen Activator and its inhibitor plasminogen activator inhibitor-1 (PAI-1), which suggests a role in endothelial cell migration and matrix remodeling | 1.18 | ↑ |
| AA102526 | Interleukin 8 | Pro-inflammatory cytokine involved in the cellular response to inflammation, being a powerful chemoattractant for neutrophils | 0.86 | ↓ |
| AI668847 | Small inducible cytokine subfamily B (Cys-X-Cys) | RNA binding, RNA-dependent DNA replication, cell-cell signaling, chemokine activity, chemotaxis, extracellular, immune response, inflammatory response, signal transduction, transferase activity | 0.59 | ↓ |
| T72877 | Interleukin 1 receptor antagonist | Neutralizes biological activity of IL1 α & β in physiologic and pathophysiologic immune and inflammatory responses | 0.80 | ↓ |
| AI074784 | Colony stimulating factor 3 (granulocyte) | Cytokines and Inflammatory Response, Regulation of hematopoiesis by cytokines | 0.75 | ↓ |
| AA150507 | Interleukin 1, beta | Pro-inflammatory cytokine that mediates acute phase response | 0.75 | ↓ |
| Signal transduction modulation | ||||
| H80263 | Phosphatidylinositol-4-phosphate 5-kinase, type II, beta | Cell surface receptor linked signal transduction | 1.34 | ↑ |
| AA913804 | Receptor-interacting serine-threonine kinase 2 | Regulation of apoptosis and protein amino acid phosphorylation | 1.34 | ↑ |
| H18633 | Protein tyrosine phosphatase, receptor type, B | Regulation of tyrosine kinase signals | 1.28 | ↑ |
| AA134814 | TRAF family member-associated NFKB activator | NF-kappaB activation through IKK-i-dependent I-TRAF/TANK phosphorylation | 1.26 | ↑ |
| AI381043 | Inositol 1,4,5-trisphosphate 3-kinase A | Serves both as a second messenger and as a substrate for inositol polyphosphate kinases | 1.24 | ↑ |
| AA489245 | Mitogen-activated protein kinase 8 interacting protein 3 | Activation of JNK via IL-1β; JNK-mediated proapoptotic stimuli. | 1.22 | ↑ |
| AA709036 | Regulator of G-protein Signalling 10 | Regulator of G protein Signaling, RGS4 type | 1.21 | ↑ |
| AA434420 | Protein tyrosine phosphatase, non-receptor type 9 | Regulates responses to extracellular signals by regulating the phosphotyrosine content of specific intracellular proteins | 1.14 | ↑ |
| AA927490 | Signal transducer and activator of transcription 2, 113kD | JAK-STAT signaling pathway | 0.89 | ↓ |
| AA182847 | Mitogen-activated protein kinase kinase kinase kinase 5 | MAPKS are extracellular signal-regulated kinases (ERKs) that act as an integration point for multiple biochemical signals because they are activated by a wide variety of extracellular signals, are rapidly phosphorylated on threonine and tyrosine residues | 0.84 | ↓ |
| AA039851 | Protein tyrosine phosphatase type IVA, member 3 | Prenylated protein tyrosine phosphatases (PTPs); regulatory role in a variety of cellular processes; modulates angiotensin-II induced cell calcium mobilization and cell growth | 0.83 | ↓ |
| AA022666 | IKK-related kinase epsilon; inducible IkappaB kinase | Transcription factor that plays an important role in the immune, anti-apoptotic and inflammatory responses. | 0.74 | ↓ |
| AA419268 | Phosphoinositide-3-kinase, | Control the activity and subcellular localisation of a diverse array of signal transduction molecules; implicated in a wide range of cellular processes, including cell cycle progression, cell growth, cell motility, cell adhesion and cell survival | 0.73 | ↓ |
| AA487426 | Rho GDP dissociation inhibitor | Caspase Cascade in Apoptosis, FAS and TNFR1 Signaling Pathway | 0.68 | ↓ |
| Oncogene regulation | ||||
| AA020001 | C-myc binding protein | C- | 1.23 | ↑ |
| W46900 | GRO1 oncogene | Regulates growth factor activity | 0.56 | ↓ |
| Regulation of structural proteins | ||||
| AA598978 | Filamin A, alpha | Actin-binding protein-280 | 0.89 | ↓ |
| W31391 | Zona occludens 2 | Regulation of tight junctions | 0.86 | ↓ |
| AA001432 | Laminin, alpha 3 | Basement membrane protein | 0.74 | ↓ |
Functional annotation classification based on physiological function of significantly regulated genes.
| Classifications | gene count (%) | |
|---|---|---|
| Biological Processes | ||
| Response to stress | 29.0 | 1.4E−5 |
| Immune response | 26.1 | 5.7 E−5 |
| Regulation of biological process | 47.8 | 3.0E−5 |
| Protein kinase cascade | 11.6 | 2.3E−4 |
| Intracellular signaling cascade | 21.7 | 3.0E−4 |
| Inflammatory response | 10.1 | 3.3E−4 |
| Regulation of signal transduction | 10.1 | 4.5E−4 |
| Cell surface receptor linked signal transduction | 26.1 | 5.2E−4 |
| Regulation of I-kappaB kinase/NF-kappaB cascade | 7.2 | 5.3E−4 |
| Regulation of cell proliferation | 10.1 | 2.0E−3 |
| Regulation of cellular physiological process | 37.7 | 3.0E−3 |
| Regulation of cell cycle | 11.6 | 4.3E−3 |
| Regulation of apoptosis | 10.1 | 4.5E−3 |
| Regulation of cell adhesion | 4.3 | 1.2E−2 |
| Molecular functions | ||
| Signal transducer activity | 47.8 | 3.0E−8 |
| Protein binding | 52.2 | 4.1E−6 |
| Cytokine activity | 11.6 | 3.8E−5 |
| Receptor binding | 17.4 | 5.0E−5 |
| Growth factor activity | 10.1 | 7.9E−5 |
| Protein kinase activity | 17.4 | 1.4E−3 |
| Protein tyrosine phosphatase activity | 5.8 | 6.7E−3 |
| Inositol or phosphatidylinositol kinase activity | 4.3 | 9.5E−3 |
| Chemokine receptor binding | 4.3 | 1.4E−2 |
| Chemokine activity | 4.3 | 1.4E−2 |
| G-protein-coupled receptor binding | 4.3 | 2.0E−2 |
| Protein serine/threonine kinase activity | 8.7 | 2.7E−2 |
Functional annotation clustering
| Gene Accesssion no | ||
|---|---|---|
| Enrichment Score: 1.95 | ||
| AA699441 | Caspase recruitment domain family, member 4 | 1.5E−3 |
| AA913804 | Receptor-interacting serine-threonine kinase 2 | 1.9E−3 |
| AA453766 | casp8 and fadd-like apoptosis regulator | 2.6E−3 |
| AA182847 | Mitogen-activated protein kinase kinase kinase kinase 5 | 1.3E−3 |
| AA489042 | Cell division cycle 2-like 5 | 1.5E−2 |
| Enrichment Score: 1.55 | ||
| AA927490 | Signal transducer and activator of transcription 2 | 1.3E−3 |
| AA020001 | c-myc binding protein | 4.5E−2 |
Using the DAVID 2.0 annotation system, functional annotational clustering of the significantly regulated genes. The group enrichment score represents the geometric mean (in log scale) of member's P-values in a corresponding annotation cluster. This is used to rank their biological significance. The Functional Annotation Clustering integrates the techniques of Kappa statistics to measure the degree of the common genes between two annotations, and fuzzy heuristic clustering to classify the groups of similar annotations according to kappa values. Thus, the more common genes annotations share, the higher chance they will be grouped together. The P-values associated with each annotation terms inside each clusters are obtained using the Fisher's Exact test or/EASE Score. In DAVID annotation system, the Fisher's Exact test is adopted to measure the gene-enrichment in annotation terms.
DAVID Pathway Viewer lists key signaling pathways that are modulated by ashwangandha treatment
| Signaling pathways | Genes (%) | |
|---|---|---|
| JAK-STAT Signaling pathway | 11.6 | 3.7E−3 |
| Apoptosis | 7.2 | 1.3E−2 |
| MAPK Signaling pathway | 10.1 | 1.8E−2 |
Figure 3.Schematic representation of the genes regulated by Ashwagandha extract in JAK-STAT signaling pathway. The genes highlighted with an asterisk (*) are significantly regulated by Ashwagandha and are important in the regulation of cell proliferation, regulation of apoptosis and immunomodulation.
Figure 4.Ashwagandha treatment significantly modulates gene expression in PC-3 cells. Graphical representation of quantitative changes in gene expression by real-time PCR. Relative mRNA species expression was quantitated and expressed as transcript accumulation index (TAI= 2–ΔΔCT), calculated using the comparative CT method. All data were controlled for quantity of RNA input by performing measurements on an endogenous reference gene, β-actin. In addition, results on RNA from Ashwagandha-treated samples were normalized to results obtained on RNA from the control, untreated sample. Data are the mean ± SD of three separate experiments done in triplicate. Statistical significance was determined by ANOVA.
Figure 5.Ashwagandha treatment significantly modulates protein expression in PC-3 cells. Graphical representation of quantitative changes in protein expression by Western blot analysis. Data are the mean ± SD of three separate experiments done in triplicate. Statistical significance was determined by ANOVA.