Literature DB >> 18951646

Evolutionary footprints of nucleosome positions in yeast.

Stefan Washietl1, Rainer Machné, Nick Goldman.   

Abstract

Using genome-wide maps of nucleosome positions in yeast, we have analyzed the influence of chromatin structure on the molecular evolution of genomic DNA. We have observed, on average, 10-15% lower substitution rates in linker regions than in nucleosomal DNA. This widespread local rate heterogeneity represents an evolutionary footprint of nucleosome positions and reveals that nucleosome organization is a genomic feature conserved over evolutionary timescales.

Entities:  

Mesh：

Substances：

Year:  2008        PMID： 18951646     DOI： 10.1016/j.tig.2008.09.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  45 in total

1.  Chromatin density and splicing destiny: on the cross-talk between chromatin structure and splicing.

Authors:  Schraga Schwartz; Gil Ast
Journal:  EMBO J       Date:  2010-04-20       Impact factor: 11.598

Review 2.  Fundamental concepts in genetics: genetics and the understanding of selection.

Authors:  Laurence D Hurst
Journal:  Nat Rev Genet       Date:  2009-02       Impact factor: 53.242

3.  Widespread signatures of recent selection linked to nucleosome positioning in the human lineage.

Authors:  James G D Prendergast; Colin A M Semple
Journal:  Genome Res       Date:  2011-09-08       Impact factor: 9.043

4.  Genomic evidence for elevated mutation rates in highly expressed genes.

Authors:  Chungoo Park; Wenfeng Qian; Jianzhi Zhang
Journal:  EMBO Rep       Date:  2012-11-13       Impact factor: 8.807

5.  Mutation hot spots in yeast caused by long-range clustering of homopolymeric sequences.

Authors:  Xin Ma; Maria V Rogacheva; K T Nishant; Sarah Zanders; Carlos D Bustamante; Eric Alani
Journal:  Cell Rep       Date:  2012-01-26       Impact factor: 9.423

6.  Nucleosome-coupled expression differences in closely-related species.

Authors:  Yuanfang Guan; Victoria Yao; Kyle Tsui; Marinella Gebbia; Maitreya J Dunham; Corey Nislow; Olga G Troyanskaya
Journal:  BMC Genomics       Date:  2011-09-26       Impact factor: 3.969

Review 7.  The effects of chromatin organization on variation in mutation rates in the genome.

Authors:  Kateryna D Makova; Ross C Hardison
Journal:  Nat Rev Genet       Date:  2015-03-03       Impact factor: 53.242

8.  The role of nucleosome positioning in the evolution of gene regulation.

Authors:  Alexander M Tsankov; Dawn Anne Thompson; Amanda Socha; Aviv Regev; Oliver J Rando
Journal:  PLoS Biol       Date:  2010-07-06       Impact factor: 8.029

Review 9.  Genomic mutation rates: what high-throughput methods can tell us.

Authors:  Koodali T Nishant; Nadia D Singh; Eric Alani
Journal:  Bioessays       Date:  2009-09       Impact factor: 4.345

10.  Evidence that localized variation in primate sequence divergence arises from an influence of nucleosome placement on DNA repair.

Authors:  Hua Ying; Julian Epps; Rohan Williams; Gavin Huttley
Journal:  Mol Biol Evol       Date:  2009-10-20       Impact factor: 16.240
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.