Literature DB >> 18951180

Combing genomic DNA for structural and functional studies.

Catherine Schurra1, Aaron Bensimon.   

Abstract

Molecular combing is a process whereby single DNA molecules bind by their extremities to a silanised surface and are then uniformly stretched and aligned by a receding air/water interface (1). This method, with a high resolution ranging from a few kilobases to megabases, has many applications in the field of molecular cytogenetics, allowing structural and functional analysis at the genome level. Here we describe protocols for preparing DNA for combing and for the use of fluorescent hybridisation (FH) applied to combed DNA to conduct physical mapping or genomic structural analysis. We also present the methodology for visualising and studying DNA replication using combed DNA.

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Year:  2009        PMID: 18951180     DOI: 10.1007/978-1-60327-461-6_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

1.  Adenovirus E1A oncogene induces rereplication of cellular DNA and alters DNA replication dynamics.

Authors:  Ghata Singhal; Elisabetta Leo; Saayi Krushna Gadham Setty; Yves Pommier; Bayar Thimmapaya
Journal:  J Virol       Date:  2013-06-05       Impact factor: 5.103

2.  DNA methylation profiling in nanochannels.

Authors:  Shuang Fang Lim; Alena Karpusenko; John J Sakon; Joseph A Hook; Tyra A Lamar; Robert Riehn
Journal:  Biomicrofluidics       Date:  2011-07-25       Impact factor: 2.800

Review 3.  Methods to detect replication-dependent and replication-independent DNA structure-induced genetic instability.

Authors:  Guliang Wang; Sally Gaddis; Karen M Vasquez
Journal:  Methods       Date:  2013-08-15       Impact factor: 3.608

4.  Structural variability of the herpes simplex virus 1 genome in vitro and in vivo.

Authors:  Charlotte Mahiet; Ayla Ergani; Nicolas Huot; Nicolas Alende; Ahmed Azough; Fabrice Salvaire; Aaron Bensimon; Emmanuel Conseiller; Simon Wain-Hobson; Marc Labetoulle; Sébastien Barradeau
Journal:  J Virol       Date:  2012-06-06       Impact factor: 5.103

5.  A winding road to origin discovery.

Authors:  Joyce L Hamlin; Larry D Mesner; Pieter A Dijkwel
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

6.  4D Visualization of replication foci in mammalian cells corresponding to individual replicons.

Authors:  V O Chagin; C S Casas-Delucchi; M Reinhart; L Schermelleh; Y Markaki; A Maiser; J J Bolius; A Bensimon; M Fillies; P Domaing; Y M Rozanov; H Leonhardt; M C Cardoso
Journal:  Nat Commun       Date:  2016-04-07       Impact factor: 14.919

7.  Telomere Length Measurement by Molecular Combing.

Authors:  Vivian F S Kahl; Joshua A M Allen; Christopher B Nelson; Alexander P Sobinoff; Michael Lee; Tatjana Kilo; Raja S Vasireddy; Hilda A Pickett
Journal:  Front Cell Dev Biol       Date:  2020-06-16

8.  A Disease-Causing Single Amino Acid Deletion in the Coiled-Coil Domain of RAD50 Impairs MRE11 Complex Functions in Yeast and Humans.

Authors:  Marie Chansel-Da Cruz; Marcel Hohl; Ilaria Ceppi; Laëtitia Kermasson; Laurence Maggiorella; Mauro Modesti; Jean-Pierre de Villartay; Talia Ileri; Petr Cejka; John H J Petrini; Patrick Revy
Journal:  Cell Rep       Date:  2020-12-29       Impact factor: 9.995

  8 in total

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