Literature DB >> 18949110

Protein wrapping: a molecular marker for association, aggregation and drug design.

Ariel Fernández1, Alejandro Crespo.   

Abstract

In this tutorial review we survey the concept of protein wrapping from a physico-chemical perspective. Wrapping is introduced as an indicator of the packing quality of protein structure. Thus, while a well-wrapped protein is sustainable in isolation, a poorly wrapped protein is reliant on binding partnerships to maintain its structural integrity. At a local level, wrapping is indicative of the extent of solvent exposure of the amide-carbonyl hydrogen bonds of the protein backbone. Poorly wrapped hydrogen bonds, the so-called dehydrons, are shown to represent structural vulnerabilities. These singularities are sticky, hence promoters of protein associations. We also focus on severely under-wrapped protein structures that belong to an order/disorder twilight. Such proteins are shown to be prone to aggregate. Finally, we survey the recent exploitation of dehydrons as targetable features to promote specificity in drug-based cancer therapy. Dehydrons prove to be valuable targets to reduce side effects and enhance drug safety.

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Year:  2008        PMID: 18949110     DOI: 10.1039/b804150b

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  9 in total

1.  M1 RNA is important for the in-cell solubility of its cognate C5 protein: Implications for RNA-mediated protein folding.

Authors:  Ahyun Son; Seong Il Choi; Gyoonhee Han; Baik L Seong
Journal:  RNA Biol       Date:  2015-10-30       Impact factor: 4.652

2.  Toxoplasma gondii Sis1-like J-domain protein is a cytosolic chaperone associated to HSP90/HSP70 complex.

Authors:  Maria J Figueras; Osvaldo A Martin; Pablo C Echeverria; Natalia de Miguel; Arunasalam Naguleswaran; William J Sullivan; Maria M Corvi; Sergio O Angel
Journal:  Int J Biol Macromol       Date:  2011-12-23       Impact factor: 6.953

Review 3.  Structure and mechanism of action of tau aggregation inhibitors.

Authors:  Katryna Cisek; Grace L Cooper; Carol J Huseby; Jeff Kuret
Journal:  Curr Alzheimer Res       Date:  2014       Impact factor: 3.498

4.  A conserved Trp residue in HwBR contributes to its unique tolerance toward acidic environments.

Authors:  Cheng-Han Yu; Hsiang-Yu Wu; Hong-Syuan Lin; Chii-Shen Yang
Journal:  Biophys J       Date:  2022-07-08       Impact factor: 3.699

5.  Novel Stilbene-Nitroxyl Hybrid Compounds Display Discrete Modulation of Amyloid Beta Toxicity and Structure.

Authors:  Silvia Hilt; Ruiwu Liu; Izumi Maezawa; Tatu Rojalin; Hnin H Aung; Madhu Budamagunta; Ryan Slez; Qizhi Gong; Randy P Carney; John C Voss
Journal:  Front Chem       Date:  2022-05-26       Impact factor: 5.545

6.  Aggregation tendencies in the p53 family are modulated by backbone hydrogen bonds.

Authors:  Elio A Cino; Iaci N Soares; Murilo M Pedrote; Guilherme A P de Oliveira; Jerson L Silva
Journal:  Sci Rep       Date:  2016-09-07       Impact factor: 4.379

Review 7.  Macromolecule-assisted de novo protein folding.

Authors:  Seong Il Choi; Ahyun Son; Keo-Heun Lim; Hotcherl Jeong; Baik L Seong
Journal:  Int J Mol Sci       Date:  2012-08-20       Impact factor: 6.208

8.  Structural Impact of Mutation D614G in SARS-CoV-2 Spike Protein: Enhanced Infectivity and Therapeutic Opportunity.

Authors:  Ariel Fernández
Journal:  ACS Med Chem Lett       Date:  2020-08-17       Impact factor: 4.345

9.  Anion Recognition by a Pincer-Type Host Constructed from Two Polyamide Macrocyclic Frameworks Jointed by a Photo-Addressable Azobenzene Switch.

Authors:  Patryk Niedbała; Magdalena Ceborska; Mart Mehmet; Wiktor Ignacak; Janusz Jurczak; Kajetan Dąbrowa
Journal:  Materials (Basel)       Date:  2022-01-17       Impact factor: 3.623

  9 in total

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