Literature DB >> 18942874

Spatial desynchronization of glycolytic waves as revealed by Karhunen-Loeve analysis.

Satenik Bagyan1, Thomas Mair, Yuri Suchorski, Marcus J B Hauser, Ronny Straube.   

Abstract

The dynamics of glycolytic waves in a yeast extract have been investigated in an open spatial reactor. At low protein contents in the extract, we find a transition from inwardly moving target patterns at the beginning of the experiment to outwardly moving spiral- or circular-shaped waves at later stages. These two phases are separated by a transition phase of more complex spatiotemporal dynamics. We have analyzed the pattern dynamics in these three intervals at different spatial scales by means of a Karhunen-Loeve (KL) decomposition. During the initial phase of the experiment, the observed patterns are sufficiently described by the two dominant KL modes independently of the spatial scale. However, during the last stage of the experiment, at least 6 KL modes are needed to account for the observed patterns at spatial scales larger than 3 mm, while for smaller scales, 2 KL modes are still sufficient. This indicates that in the course of the experiment, the local glycolytic oscillators become desynchronized at spatial scales larger than 3 mm. Possible reasons for the desynchronization of the glycolytic waves are discussed.

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Year:  2008        PMID: 18942874     DOI: 10.1021/jp805087m

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

1.  Inward rotating spiral waves in glycolysis.

Authors:  Ronny Straube; Satenik Vermeer; Ernesto M Nicola; Thomas Mair
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

Review 2.  Synchronisation of glycolytic activity in yeast cells.

Authors:  Marcus J B Hauser
Journal:  Curr Genet       Date:  2021-10-11       Impact factor: 3.886

3.  Diffusive coupling can discriminate between similar reaction mechanisms in an allosteric enzyme system.

Authors:  Ronny Straube; Ernesto M Nicola
Journal:  BMC Syst Biol       Date:  2010-11-30

4.  Spatially coupled catalytic ignition of CO oxidation on Pt: mesoscopic versus nano-scale.

Authors:  C Spiel; D Vogel; R Schlögl; G Rupprechter; Y Suchorski
Journal:  Ultramicroscopy       Date:  2015-05-14       Impact factor: 2.689

5.  Partial synchronisation of glycolytic oscillations in yeast cell populations.

Authors:  André Weber; Werner Zuschratter; Marcus J B Hauser
Journal:  Sci Rep       Date:  2020-11-12       Impact factor: 4.379

  5 in total

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