Literature DB >> 18940826

QGene 4.0, an extensible Java QTL-analysis platform.

Roby Joehanes1, James C Nelson.   

Abstract

UNLABELLED: Of many statistical methods developed to date for quantitative trait locus (QTL) analysis, only a limited subset are available in public software allowing their exploration, comparison and practical application by researchers. We have developed QGene 4.0, a plug-in platform that allows execution and comparison of a variety of modern QTL-mapping methods and supports third-party addition of new ones. The software accommodates line-cross mating designs consisting of any arbitrary sequence of selfing, backcrossing, intercrossing and haploid-doubling steps that includes map, population, and trait simulators; and is scriptable. AVAILABILITY: Software and documentation are available at http://coding.plantpath.ksu.edu/qgene. Source code is available on request.

Mesh：

Year:  2008        PMID： 18940826     DOI： 10.1093/bioinformatics/btn523

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  113 in total

1.  Fine mapping of QTLs for rice grain yield under drought reveals sub-QTLs conferring a response to variable drought severities.

Authors:  Shalabh Dixit; B P Mallikarjuna Swamy; Prashant Vikram; H U Ahmed; M T Sta Cruz; Modesto Amante; Dinesh Atri; Hei Leung; Arvind Kumar
Journal:  Theor Appl Genet       Date:  2012-02-24       Impact factor: 5.699

2.  Bayesian mapping of multiple traits in maize: the importance of pleiotropic effects in studying the inheritance of quantitative traits.

Authors:  Marcio Balestre; Renzo Garcia Von Pinho; Claudio Lopes de Souza; Júlio Sílvio de Sousa Bueno Filho
Journal:  Theor Appl Genet       Date:  2012-03-22       Impact factor: 5.699

3.  QTL mapping of internal heat necrosis in tetraploid potato.

Authors:  P H McCord; B R Sosinski; K G Haynes; M E Clough; G C Yencho
Journal:  Theor Appl Genet       Date:  2010-08-28       Impact factor: 5.699

4.  Speciation genes in the genus Petunia.

Authors:  Julien Venail; Alexandre Dell'olivo; Cris Kuhlemeier
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-02-12       Impact factor: 6.237

5.  Linkage analysis in unconventional mating designs in line crosses.

Authors:  James C Nelson
Journal:  Theor Appl Genet       Date:  2011-06-18       Impact factor: 5.699

6.  Targeted discovery of quantitative trait loci for resistance to northern leaf blight and other diseases of maize.

Authors:  Chia-Lin Chung; Jesse Poland; Kristen Kump; Jacqueline Benson; Joy Longfellow; Ellie Walsh; Peter Balint-Kurti; Rebecca Nelson
Journal:  Theor Appl Genet       Date:  2011-04-28       Impact factor: 5.699

7.  A novel quantitative trait locus for Fusarium head blight resistance in chromosome 7A of wheat.

Authors:  D V Jayatilake; G H Bai; Y H Dong
Journal:  Theor Appl Genet       Date:  2011-01-08       Impact factor: 5.699

8.  Control of grain protein contents through SEMIDWARF1 mutant alleles: sd1 increases the grain protein content in Dee-geo-woo-gen but not in Reimei.

Authors:  Tomio Terao; Tatsuro Hirose
Journal:  Mol Genet Genomics       Date:  2014-12-10       Impact factor: 3.291

9.  Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea.

Authors:  Akash Sharma; Udita Basu; Naveen Malik; Anurag Daware; Virevol Thakro; Laxmi Narnoliya; Deepak Bajaj; Shailesh Tripathi; V S Hegde; Hari D Upadhyaya; Akhilesh K Tyagi; Swarup K Parida
Journal:  Funct Integr Genomics       Date:  2019-06-08       Impact factor: 3.410

10.  Fine mapping of a resistance gene to bacterial leaf pustule in soybean.

Authors:  Dong Hyun Kim; Kil Hyun Kim; Kyujung Van; Moon Young Kim; Suk-Ha Lee
Journal:  Theor Appl Genet       Date:  2010-01-20       Impact factor: 5.699
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