Literature DB >> 18938175

Characterization of a Bacillus subtilis 64-kDa DNA polymerase X potentially involved in DNA repair.

Benito Baños1, José M Lázaro, Laurentino Villar, Margarita Salas, Miguel de Vega.   

Abstract

Bacillus subtilis gene yshC encodes a 64-kDa family X DNA polymerase (PolXBs), which contains all the critical residues involved in DNA and nucleotide binding as well as those responsible for catalysis of DNA polymerization, conserved in most family X members. Biochemical analyses of the purified enzyme indicate that PolXBs is a monomeric and strictly template-directed DNA polymerase, preferentially acting on DNA structures containing gaps from one to a few nucleotides and bearing a phosphate group at the 5' end of the downstream DNA. The fact that PolXBs is able to conduct filling of a single-nucleotide gap, allowing further sealing of the resulting nick by a DNA ligase, points to a putative role in base excision repair during the B. subtilis life cycle.

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Year:  2008        PMID: 18938175     DOI: 10.1016/j.jmb.2008.09.081

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  13 in total

1.  Intrinsic apurinic/apyrimidinic (AP) endonuclease activity enables Bacillus subtilis DNA polymerase X to recognize, incise, and further repair abasic sites.

Authors:  Benito Baños; Laurentino Villar; Margarita Salas; Miguel de Vega
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

2.  The family X DNA polymerase from Deinococcus radiodurans adopts a non-standard extended conformation.

Authors:  Nicolas Leulliot; Lionel Cladière; François Lecointe; Dominique Durand; Ulrich Hübscher; Herman van Tilbeurgh
Journal:  J Biol Chem       Date:  2009-02-26       Impact factor: 5.157

3.  Proteomic analysis of cross protection provided between cold and osmotic stress in Listeria monocytogenes.

Authors:  Joseph R Pittman; Joe O Buntyn; Gabriel Posadas; Bindu Nanduri; Ken Pendarvis; Janet R Donaldson
Journal:  J Proteome Res       Date:  2014-03-05       Impact factor: 4.466

4.  Phylogenetic analysis and evolutionary origins of DNA polymerase X-family members.

Authors:  Rachelle J Bienstock; William A Beard; Samuel H Wilson
Journal:  DNA Repair (Amst)       Date:  2014-08-09

Review 5.  DNA repair and genome maintenance in Bacillus subtilis.

Authors:  Justin S Lenhart; Jeremy W Schroeder; Brian W Walsh; Lyle A Simmons
Journal:  Microbiol Mol Biol Rev       Date:  2012-09       Impact factor: 11.056

Review 6.  Oxidative stress resistance in Deinococcus radiodurans.

Authors:  Dea Slade; Miroslav Radman
Journal:  Microbiol Mol Biol Rev       Date:  2011-03       Impact factor: 11.056

7.  Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems.

Authors:  Rihito Morita; Shuhei Nakane; Atsuhiro Shimada; Masao Inoue; Hitoshi Iino; Taisuke Wakamatsu; Kenji Fukui; Noriko Nakagawa; Ryoji Masui; Seiki Kuramitsu
Journal:  J Nucleic Acids       Date:  2010-10-14

8.  Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3'-5' exonuclease activity.

Authors:  Shuhei Nakane; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Journal:  Nucleic Acids Res       Date:  2009-02-11       Impact factor: 16.971

9.  A structural role for the PHP domain in E. coli DNA polymerase III.

Authors:  Tiago Barros; Joel Guenther; Brian Kelch; Jordan Anaya; Arjun Prabhakar; Mike O'Donnell; John Kuriyan; Meindert H Lamers
Journal:  BMC Struct Biol       Date:  2013-05-14

10.  DNA stabilization at the Bacillus subtilis PolX core--a binding model to coordinate polymerase, AP-endonuclease and 3'-5' exonuclease activities.

Authors:  Benito Baños; Laurentino Villar; Margarita Salas; Miguel de Vega
Journal:  Nucleic Acids Res       Date:  2012-07-25       Impact factor: 16.971

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