Literature DB >> 18937364

Network modeling of signal transduction: establishing the global view.

Hans A Kestler1, Christian Wawra, Barbara Kracher, Michael Kühl.   

Abstract

Embryonic development and adult tissue homeostasis are controlled through activation of intracellular signal transduction pathways by extracellular growth factors. In the past, signal transduction has largely been regarded as a linear process. However, more recent data from large-scale and high-throughput experiments indicate that there is extensive cross-talk between individual signaling cascades leading to the notion of a signaling network. The behavior of such complex networks cannot be predicted by simple intuitive approaches but requires sophisticated models and computational simulations. The purpose of such models is to generate experimentally testable hypotheses and to find explanations for unexpected experimental results. Here, we discuss the need for, and the future impact of, mathematical models for exploring signal transduction in different biological contexts such as for example development.

Mesh:

Year:  2008        PMID: 18937364     DOI: 10.1002/bies.20834

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  35 in total

1.  Epigenetic regulation of WNT signaling in chronic lymphocytic leukemia.

Authors:  Lynda B Bennett; Kristen H Taylor; Gerald L Arthur; Farahnaz B Rahmatpanah; Sam I Hooshmand; Charles W Caldwell
Journal:  Epigenomics       Date:  2010-02-01       Impact factor: 4.778

Review 2.  Lens fibre cell differentiation and organelle loss: many paths lead to clarity.

Authors:  Michael A Wride
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-04-27       Impact factor: 6.237

3.  Representing dynamic biological networks with multi-scale probabilistic models.

Authors:  Alexander Groß; Barbara Kracher; Johann M Kraus; Silke D Kühlwein; Astrid S Pfister; Sebastian Wiese; Katrin Luckert; Oliver Pötz; Thomas Joos; Dries Van Daele; Luc De Raedt; Michael Kühl; Hans A Kestler
Journal:  Commun Biol       Date:  2019-01-17

4.  IP3 3-kinase B controls hematopoietic stem cell homeostasis and prevents lethal hematopoietic failure in mice.

Authors:  Sabine Siegemund; Stephanie Rigaud; Claire Conche; Blake Broaten; Lana Schaffer; Luise Westernberg; Steven Robert Head; Karsten Sauer
Journal:  Blood       Date:  2015-03-18       Impact factor: 22.113

5.  Signaling networks in Leishmania macrophages deciphered through integrated systems biology: a mathematical modeling approach.

Authors:  Milsee Mol; Milind S Patole; Shailza Singh
Journal:  Syst Synth Biol       Date:  2013-07-04

Review 6.  Logic-based models for the analysis of cell signaling networks.

Authors:  Melody K Morris; Julio Saez-Rodriguez; Peter K Sorger; Douglas A Lauffenburger
Journal:  Biochemistry       Date:  2010-04-20       Impact factor: 3.162

7.  A Boolean model of the gene regulatory network underlying Mammalian cortical area development.

Authors:  Clare E Giacomantonio; Geoffrey J Goodhill
Journal:  PLoS Comput Biol       Date:  2010-09-16       Impact factor: 4.475

8.  Uncovering Notch pathway in the parasitic flatworm Schistosoma mansoni.

Authors:  Lizandra G Magalhães; Enyara R Morais; Carla B Machado; Matheus S Gomes; Fernanda J Cabral; Julia M Souza; Cláudia S Soares; Renata G Sá; William Castro-Borges; Vanderlei Rodrigues
Journal:  Parasitol Res       Date:  2016-06-25       Impact factor: 2.289

9.  Examination of effects of GSK3beta phosphorylation, beta-catenin phosphorylation, and beta-catenin degradation on kinetics of Wnt signaling pathway using computational method.

Authors:  Ying-Chieh Sun
Journal:  Theor Biol Med Model       Date:  2009-07-22       Impact factor: 2.432

10.  Effects of angiopoietins-1 and -2 on the receptor tyrosine kinase Tie2 are differentially regulated at the endothelial cell surface.

Authors:  Tania M Hansen; Harprit Singh; Tariq A Tahir; Nicholas P J Brindle
Journal:  Cell Signal       Date:  2010-03       Impact factor: 4.315

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