Literature DB >> 18936751

Targeting and tinkering with interaction networks.

Robert B Russell1, Patrick Aloy.   

Abstract

Biological interaction networks have been in the scientific limelight for nearly a decade. Increasingly, the concept of network biology and its various applications are becoming more commonplace in the community. Recent years have seen networks move from pretty pictures with limited application to solid concepts that are increasingly used to understand the fundamentals of biology. They are no longer merely results of postgenome analysis projects, but are now the starting point of many of the most exciting new scientific developments. We discuss here recent progress in identifying and understanding interaction networks, new tools that use them in predictive ways in exciting areas of biology, and how they have become the focus of many efforts to study, design and tinker with biological systems, with applications in biomedicine, bioengineering, ecology and beyond.

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Year:  2008        PMID: 18936751     DOI: 10.1038/nchembio.119

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  37 in total

1.  Prediction of Protein-Protein Interaction Sites with Machine-Learning-Based Data-Cleaning and Post-Filtering Procedures.

Authors:  Guang-Hui Liu; Hong-Bin Shen; Dong-Jun Yu
Journal:  J Membr Biol       Date:  2015-11-12       Impact factor: 1.843

Review 2.  Proof of concept: network and systems biology approaches aid in the discovery of potent anticancer drug combinations.

Authors:  Asfar S Azmi; Zhiwei Wang; Philip A Philip; Ramzi M Mohammad; Fazlul H Sarkar
Journal:  Mol Cancer Ther       Date:  2010-11-01       Impact factor: 6.261

Review 3.  Systems vaccinology: learning to compute the behavior of vaccine induced immunity.

Authors:  Helder I Nakaya; Shuzhao Li; Bali Pulendran
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-10-19

4.  Are maternal mitochondria the selfish entities that are masters of the cells of eukaryotic multicellular organisms?

Authors:  Luigi F Agnati; Peter W Barlow; E Baldelli; Frantisek Baluska
Journal:  Commun Integr Biol       Date:  2009

5.  Mosaic, self-similarity logic, and biological attraction principles: three explanatory instruments in biology.

Authors:  Luigi F Agnati; Frantisek Baluska; Peter W Barlow; Diego Guidolin
Journal:  Commun Integr Biol       Date:  2009-11

6.  Global view of bionetwork dynamics: adaptive landscape.

Authors:  Ping Ao
Journal:  J Genet Genomics       Date:  2009-02       Impact factor: 4.275

7.  Novel peptide-mediated interactions derived from high-resolution 3-dimensional structures.

Authors:  Amelie Stein; Patrick Aloy
Journal:  PLoS Comput Biol       Date:  2010-05-20       Impact factor: 4.475

Review 8.  Analysis of cooperativity by isothermal titration calorimetry.

Authors:  Alan Brown
Journal:  Int J Mol Sci       Date:  2009-08-04       Impact factor: 5.923

9.  Large-scale prediction of protein-protein interactions from structures.

Authors:  Martial Hue; Michael Riffle; Jean-Philippe Vert; William S Noble
Journal:  BMC Bioinformatics       Date:  2010-03-18       Impact factor: 3.169

10.  Pushing structural information into the yeast interactome by high-throughput protein docking experiments.

Authors:  Roberto Mosca; Carles Pons; Juan Fernández-Recio; Patrick Aloy
Journal:  PLoS Comput Biol       Date:  2009-08-28       Impact factor: 4.475

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