Literature DB >> 18935980

Small RNAs establish gene expression thresholds.

Erel Levine1, Terence Hwa.   

Abstract

The central role of small RNAs in regulating bacterial gene expression has been elucidated in the past years. Typically, small RNAs act via specific basepairing with target mRNAs, leading to modulation of translation initiation and mRNA stability. Quantitative studies suggest that small RNA regulation is characterized by unique features, which allow it to complement regulation at the transcriptional level. In particular, small RNAs are shown to establish a threshold for the expression of their target, providing safety mechanism against random fluctuations and transient signals. The threshold level is set by the transcription rate of the small RNA and can thus be modulated dynamically to reflect changing environmental conditions.

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Year:  2008        PMID: 18935980      PMCID: PMC2613760          DOI: 10.1016/j.mib.2008.09.016

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  50 in total

1.  Real-time kinetics of gene activity in individual bacteria.

Authors:  Ido Golding; Johan Paulsson; Scott M Zawilski; Edward C Cox
Journal:  Cell       Date:  2005-12-16       Impact factor: 41.582

Review 2.  Small noncoding RNAs controlling pathogenesis.

Authors:  Alejandro Toledo-Arana; Francis Repoila; Pascale Cossart
Journal:  Curr Opin Microbiol       Date:  2007-03-23       Impact factor: 7.934

Review 3.  Small RNA regulators and the bacterial response to stress.

Authors:  S Gottesman; C A McCullen; M Guillier; C K Vanderpool; N Majdalani; J Benhammou; K M Thompson; P C FitzGerald; N A Sowa; D J FitzGerald
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2006

4.  Probing gene expression in live cells, one protein molecule at a time.

Authors:  Ji Yu; Jie Xiao; Xiaojia Ren; Kaiqin Lao; X Sunney Xie
Journal:  Science       Date:  2006-03-17       Impact factor: 47.728

5.  Stochastic protein expression in individual cells at the single molecule level.

Authors:  Long Cai; Nir Friedman; X Sunney Xie
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

Review 6.  Antisense RNA-regulated programmed cell death.

Authors:  K Gerdes; A P Gultyaev; T Franch; K Pedersen; N D Mikkelsen
Journal:  Annu Rev Genet       Date:  1997       Impact factor: 16.830

7.  Stochastic mechanisms in gene expression.

Authors:  H H McAdams; A Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-04       Impact factor: 11.205

8.  Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq.

Authors:  Hiroshi Kawamoto; Yukari Koide; Teppei Morita; Hiroji Aiba
Journal:  Mol Microbiol       Date:  2006-07-12       Impact factor: 3.501

9.  Effect of RyhB small RNA on global iron use in Escherichia coli.

Authors:  Eric Massé; Carin K Vanderpool; Susan Gottesman
Journal:  J Bacteriol       Date:  2005-10       Impact factor: 3.490

Review 10.  How pathogenic bacteria evade mammalian sabotage in the battle for iron.

Authors:  Michael A Fischbach; Hening Lin; David R Liu; Christopher T Walsh
Journal:  Nat Chem Biol       Date:  2006-03       Impact factor: 15.040

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  59 in total

1.  Hfq virulence regulation in enterohemorrhagic Escherichia coli O157:H7 strain 86-24.

Authors:  Melissa M Kendall; Charley C Gruber; David A Rasko; David T Hughes; Vanessa Sperandio
Journal:  J Bacteriol       Date:  2011-10-07       Impact factor: 3.490

2.  Quantifying mRNA synthesis and decay rates using small RNAs.

Authors:  Vlad Elgart; Tao Jia; Rahul Kulkarni
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

Review 3.  Bacterial small RNA regulators: versatile roles and rapidly evolving variations.

Authors:  Susan Gottesman; Gisela Storz
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-12-01       Impact factor: 10.005

4.  Characterizing the transcriptional adaptation of Staphylococcus aureus to stationary phase growth.

Authors:  Andy Weiss; William H Broach; Lindsey N Shaw
Journal:  Pathog Dis       Date:  2016-05-08       Impact factor: 3.166

Review 5.  cis-antisense RNA, another level of gene regulation in bacteria.

Authors:  Jens Georg; Wolfgang R Hess
Journal:  Microbiol Mol Biol Rev       Date:  2011-06       Impact factor: 11.056

6.  Quantifying the sequence-function relation in gene silencing by bacterial small RNAs.

Authors:  Yue Hao; Zhongge J Zhang; David W Erickson; Min Huang; Yingwu Huang; Junbai Li; Terence Hwa; Hualin Shi
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-08       Impact factor: 11.205

7.  Origins of binary gene expression in post-transcriptional regulation by microRNAs.

Authors:  I Bose; S Ghosh
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-15       Impact factor: 1.890

8.  Functional characteristics of a double negative feedback loop mediated by microRNAs.

Authors:  Shuiming Cai; Peipei Zhou; Zengrong Liu
Journal:  Cogn Neurodyn       Date:  2013-01-05       Impact factor: 5.082

9.  Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments.

Authors:  Ugo Ala; Florian A Karreth; Carla Bosia; Andrea Pagnani; Riccardo Taulli; Valentine Léopold; Yvonne Tay; Paolo Provero; Riccardo Zecchina; Pier Paolo Pandolfi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-27       Impact factor: 11.205

10.  Hfq negatively regulates type III secretion in EHEC and several other pathogens.

Authors:  Elizabeth A Shakhnovich; Brigid M Davis; Matthew K Waldor
Journal:  Mol Microbiol       Date:  2009-08-24       Impact factor: 3.501

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