Literature DB >> 18931299

Cross-kingdom amplification using bacteria-specific primers: complications for studies of coral microbial ecology.

Julia P Galkiewicz1, Christina A Kellogg.   

Abstract

PCR amplification of pure bacterial DNA is vital to the study of bacterial interactions with corals. Commonly used Bacteria-specific primers 8F and 27F paired with the universal primer 1492R amplify both eukaryotic and prokaryotic rRNA genes. An alternative primer set, 63F/1542R, is suggested to resolve this problem.

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Year:  2008        PMID： 18931299      PMCID： PMC2607152          DOI： 10.1128/AEM.01303-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  23 in total

1.  Endolithic fungi in reef-building corals (Order : Scleractinia) are common, cosmopolitan, and potentially pathogenic.

Authors:  C J Bentis; L Kaufman; S Golubic
Journal:  Biol Bull       Date:  2000-04       Impact factor: 1.818

2.  The bacterial ecology of a plague-like disease affecting the Caribbean coral Montastrea annularis.

Authors:  Olga Pantos; Rory P Cooney; Martin D A Le Tissier; Michael R Barer; Anthony G O'Donnell; John C Bythell
Journal:  Environ Microbiol       Date:  2003-05       Impact factor: 5.491

3.  Characterization of the bacterial consortium associated with black band disease in coral using molecular microbiological techniques.

Authors:  Rory P Cooney; Olga Pantos; Martin D A Le Tissier; Michael R Barer; Anthony G O'Donnell; John C Bythell
Journal:  Environ Microbiol       Date:  2002-07       Impact factor: 5.491

4.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

5.  Diversity of culturable bacteria in the mucus of the Red Sea coral Fungia scutaria.

Authors:  Yael Lampert; Dovi Kelman; Zvy Dubinsky; Yeshayahu Nitzan; Russell T Hill
Journal:  FEMS Microbiol Ecol       Date:  2006-10       Impact factor: 4.194

6.  The coral probiotic hypothesis.

Authors:  Leah Reshef; Omry Koren; Yossi Loya; Ilana Zilber-Rosenberg; Eugene Rosenberg
Journal:  Environ Microbiol       Date:  2006-12       Impact factor: 5.491

7.  Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes.

Authors:  Jeremy A Frank; Claudia I Reich; Shobha Sharma; Jon S Weisbaum; Brenda A Wilson; Gary J Olsen
Journal:  Appl Environ Microbiol       Date:  2008-02-22       Impact factor: 4.792

8.  Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis.

Authors:  Rita Sipos; Anna J Székely; Márton Palatinszky; Sára Révész; Károly Márialigeti; Marcell Nikolausz
Journal:  FEMS Microbiol Ecol       Date:  2007-03-02       Impact factor: 4.194

9.  Detection of Actinobacteria cultivated from environmental samples reveals bias in universal primers.

Authors:  M H Farris; J B Olson
Journal:  Lett Appl Microbiol       Date:  2007-10       Impact factor: 2.858

10.  Specificity and sensitivity of eubacterial primers utilized for molecular profiling of bacteria within complex microbial ecosystems.

Authors:  S A Huws; J E Edwards; E J Kim; N D Scollan
Journal:  J Microbiol Methods       Date:  2007-06-30       Impact factor: 2.363
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  37 in total

1.  Marine bacterial biodegradation of low-density polyethylene (LDPE) plastic.

Authors:  Shrikant D Khandare; Doongar R Chaudhary; Bhavanath Jha
Journal:  Biodegradation       Date:  2021-02-05       Impact factor: 3.909

2.  Antibiotic treatment disrupts bacterial communities in the colon and rectum of simian immunodeficiency virus-infected macaques.

Authors:  Alexander S Zevin; Tiffany Hensley-McBain; Charlene Miller; Elise Smith; Stanley Langevin; Nichole R Klatt
Journal:  FEMS Microbiol Lett       Date:  2017-12-15       Impact factor: 2.742

3.  Genomic and metagenomic insights into the microbial community of a thermal spring.

Authors:  Renato Pedron; Alfonso Esposito; Irene Bianconi; Edoardo Pasolli; Adrian Tett; Francesco Asnicar; Mario Cristofolini; Nicola Segata; Olivier Jousson
Journal:  Microbiome       Date:  2019-01-23       Impact factor: 14.650

4.  Biochemical characterization of Sinorhizobium meliloti mutants reveals gene products involved in the biosynthesis of the unusual lipid A very long-chain fatty acid.

Authors:  Andreas F Haag; Silvia Wehmeier; Artur Muszyński; Bernhard Kerscher; Vivien Fletcher; Susan H Berry; Georgina L Hold; Russell W Carlson; Gail P Ferguson
Journal:  J Biol Chem       Date:  2011-03-26       Impact factor: 5.157

5.  Anoxybacillus sp. Strain UARK-01, a New Thermophilic Soil Bacterium with Hyperthermostable Alkaline Laccase Activity.

Authors:  Thamir H Al-Kahem Al-Balawi; Adam L Wood; Alexis Solis; Ted Cooper; Ravi D Barabote
Journal:  Curr Microbiol       Date:  2017-04-08       Impact factor: 2.188

6.  Effects of rehydration on physiological and transcriptional responses of a water-stressed rhizobium.

Authors:  Jie Zhu; Xin Jiang; Dawei Guan; Yaowei Kang; Li Li; Fengming Cao; Baisuo Zhao; Mingchao Ma; Ji Zhao; Jun Li
Journal:  J Microbiol       Date:  2021-11-26       Impact factor: 3.422

7.  Bacterial communities of two ubiquitous Great Barrier Reef corals reveals both site- and species-specificity of common bacterial associates.

Authors:  E Charlotte E Kvennefors; Eugenia Sampayo; Tyrone Ridgway; Andrew C Barnes; Ove Hoegh-Guldberg
Journal:  PLoS One       Date:  2010-04-29       Impact factor: 3.240

8.  Cross-Reactivity of Prokaryotic 16S rDNA-Specific Primers to Eukaryotic DNA: Mistaken Microbial Community Profiling in Environmental Samples.

Authors:  Shailendra Yadav; Arvind Kumar; Manish Gupta; S S Maitra
Journal:  Curr Microbiol       Date:  2018-04-02       Impact factor: 2.188

9.  Polymerase chain reaction-based screening method applicable universally to environmental haloarchaea and halobacteria for identifying polyhydroxyalkanoate producers among them.

Authors:  Riddhi Mahansaria; Jayanta Debabrata Choudhury; Joydeep Mukherjee
Journal:  Extremophiles       Date:  2015-08-04       Impact factor: 2.395

10.  Ovine pedomics: the first study of the ovine foot 16S rRNA-based microbiome.

Authors:  Leo A Calvo-Bado; Brian B Oakley; Scot E Dowd; Laura E Green; Graham F Medley; Atiya Ul-Hassan; Vicky Bateman; William Gaze; Luci Witcomb; Rose Grogono-Thomas; Jasmeet Kaler; Claire L Russell; Elizabeth M H Wellington
Journal:  ISME J       Date:  2011-03-24       Impact factor: 10.302
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