Literature DB >> 18931298

Genetic diversity and abundance of flavobacterial proteorhodopsin in China seas.

Meiru Zhao1, Feng Chen, Nianzhi Jiao.   

Abstract

Proteorhodopsin (PR) genes related to Flavobacteria were found to be highly diverse in the East and South China seas and displayed a distinct geographic pattern, which appeared to reflect cold versus warm adaptation when Global Oceanic Sampling database metagenomic data were included. Flavobacterial PR genes were more abundant offshore than nearshore, implying that inheritance of the PR gene could be important for Flavobacteria living in the oligotrophic environment.

Mesh：

Substances：

Year:  2008        PMID： 18931298      PMCID： PMC2620697          DOI： 10.1128/AEM.01114-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  31 in total

1.  Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter.

Authors:  M T Cottrell; D L Kirchman
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

2.  Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

Authors:  F O Glöckner; B M Fuchs; R Amann
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

3.  Proteorhodopsin phototrophy in the ocean.

Authors:  O Béjà; E N Spudich; J L Spudich; M Leclerc; E F DeLong
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

4.  Novel Proteorhodopsin variants from the Mediterranean and Red Seas.

Authors:  Gazalah Sabehi; Ramon Massana; Joseph P Bielawski; Mira Rosenberg; Edward F Delong; Oded Béjà
Journal:  Environ Microbiol       Date:  2003-10       Impact factor: 5.491

5.  Proteorhodopsin is a light-driven proton pump with variable vectoriality.

Authors:  Thomas Friedrich; Sven Geibel; Rolf Kalmbach; Igor Chizhov; Kenichi Ataka; Joachim Heberle; Martin Engelhard; Ernst Bamberg
Journal:  J Mol Biol       Date:  2002-08-30       Impact factor: 5.469

6.  Different SAR86 subgroups harbour divergent proteorhodopsins.

Authors:  Gazalah Sabehi; Oded Béjà; Marcelino T Suzuki; Christina M Preston; Edward F DeLong
Journal:  Environ Microbiol       Date:  2004-09       Impact factor: 5.491

7.  Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

Authors:  Patrick D Schloss; Jo Handelsman
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

8.  Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean.

Authors:  Guy C J Abell; John P Bowman
Journal:  FEMS Microbiol Ecol       Date:  2005-01-01       Impact factor: 4.194

9.  Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla.

Authors:  Jay McCarren; Edward F DeLong
Journal:  Environ Microbiol       Date:  2007-04       Impact factor: 5.491

10.  The characteristics of nutrients and eutrophication in the Pearl River estuary, South China.

Authors:  X P Huang; L M Huang; W Z Yue
Journal:  Mar Pollut Bull       Date:  2003       Impact factor: 5.553
View more
  8 in total

1.  Crystallization and preliminary X-ray crystallographic analysis of a blue-light-absorbing proteorhodopsin.

Authors:  Ning Wang; Meitian Wang; Yanyan Gao; Tingting Ran; Yanli Lan; Jian Wang; Langlai Xu; Weiwu Wang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-02-22

2.  Constitutive expression of the proteorhodopsin gene by a flavobacterium strain representative of the proteorhodopsin-producing microbial community in the North Sea.

Authors:  Thomas Riedel; Jürgen Tomasch; Ina Buchholz; Jenny Jacobs; Mario Kollenberg; Gunnar Gerdts; Antje Wichels; Thorsten Brinkhoff; Heribert Cypionka; Irene Wagner-Döbler
Journal:  Appl Environ Microbiol       Date:  2010-03-19       Impact factor: 4.792

3.  Proteorhodopsin-bearing bacteria in Antarctic sea ice.

Authors:  Eileen Y Koh; Nof Atamna-Ismaeel; Andrew Martin; Rebecca O M Cowie; Oded Beja; Simon K Davy; Elizabeth W Maas; Ken G Ryan
Journal:  Appl Environ Microbiol       Date:  2010-07-02       Impact factor: 4.792

Review 4.  Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Authors:  Jarone Pinhassi; Edward F DeLong; Oded Béjà; José M González; Carlos Pedrós-Alió
Journal:  Microbiol Mol Biol Rev       Date:  2016-09-14       Impact factor: 11.056

5.  Structure of an Inward Proton-Transporting Anabaena Sensory Rhodopsin Mutant: Mechanistic Insights.

Authors:  Bamboo Dong; Lissete Sánchez-Magraner; Hartmut Luecke
Journal:  Biophys J       Date:  2016-09-06       Impact factor: 4.033

6.  Using total internal reflection fluorescence microscopy to visualize rhodopsin-containing cells.

Authors:  J L Keffer; C R Sabanayagam; M E Lee; E F DeLong; M W Hahn; J A Maresca
Journal:  Appl Environ Microbiol       Date:  2015-03-13       Impact factor: 4.792

7.  Recent advances and future perspectives in microbial phototrophy in antarctic sea ice.

Authors:  Eileen Y Koh; Andrew R Martin; Andrew McMinn; Ken G Ryan
Journal:  Biology (Basel)       Date:  2012-10-22

8.  Evaluation of immunomagnetic separation for the detection of Salmonella in surface waters by polymerase chain reaction.

Authors:  Chao-Yu Hsu; Bing-Mu Hsu; Tien-Yu Chang; Tsui-Kang Hsu; Shu-Min Shen; Yi-Chou Chiu; Hung-Jen Wang; Wen-Tsai Ji; Cheng-Wei Fan; Jyh-Larng Chen
Journal:  Int J Environ Res Public Health       Date:  2014-09-19       Impact factor: 3.390
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.