Literature DB >> 18931085

iTRAQ analysis of Singapore grouper iridovirus infection in a grouper embryonic cell line.

Li Ming Chen1, Bich Ngoc Tran1, Qingsong Lin1, Teck Kwang Lim1, Fan Wang1, Choy-Leong Hew1.   

Abstract

We report, here, the first proteomics study of a grouper embryonic cell line (GEC) infected by Singapore grouper iridovirus (SGIV). The differential proteomes of GEC with and without viral infection were studied and quantified with iTRAQ labelling followed by liquid chromatography/tandem mass spectrometry (LC-MS/MS). Forty-nine viral proteins were recognized, of which 11 were identified for the first time. Moreover, 743 host proteins were revealed and classified into 218 unique protein groups. Fourteen host proteins were upregulated and five host proteins were downregulated upon viral infection. The iTRAQ analysis of SGIV infection in GEC provides an insight to viral and host gene products at the protein level. This should facilitate further study and the understanding of virus-host interactions, molecular mechanisms of viral infection and pathogenesis.

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Year:  2008        PMID: 18931085     DOI: 10.1099/vir.0.2008/003681-0

Source DB:  PubMed          Journal:  J Gen Virol        ISSN: 0022-1317            Impact factor:   3.891


  7 in total

1.  Segmentation and Comparative Modeling in an 8.6-Å Cryo-EM Map of the Singapore Grouper Iridovirus.

Authors:  Grigore Pintilie; Dong-Hua Chen; Bich Ngoc Tran; Joanita Jakana; Jinlu Wu; Choy Leong Hew; Wah Chiu
Journal:  Structure       Date:  2019-08-22       Impact factor: 5.006

2.  Novel histone H3 binding protein ORF158L from the Singapore grouper iridovirus.

Authors:  Bich Ngoc Tran; Liming Chen; Yang Liu; Jinlu Wu; Adrián Velázquez-Campoy; J Sivaraman; Choy Leong Hew
Journal:  J Virol       Date:  2011-06-29       Impact factor: 5.103

3.  Current approaches on viral infection: proteomics and functional validations.

Authors:  Jie Zheng; Boon Huan Tan; Richard Sugrue; Kai Tang
Journal:  Front Microbiol       Date:  2012-11-16       Impact factor: 5.640

4.  Transcriptome analysis of orange-spotted grouper (Epinephelus coioides) spleen in response to Singapore grouper iridovirus.

Authors:  Youhua Huang; Xiaohong Huang; Yang Yan; Jia Cai; Zhengliang Ouyang; Huachun Cui; Peiran Wang; Qiwei Qin
Journal:  BMC Genomics       Date:  2011-11-12       Impact factor: 3.969

5.  Proteomic analysis of Chilo iridescent virus.

Authors:  Ikbal Agah Ince; Sjef A Boeren; Monique M van Oers; Jacques J M Vervoort; Just M Vlak
Journal:  Virology       Date:  2010-07-02       Impact factor: 3.616

Review 6.  Viral proteomics: the emerging cutting-edge of virus research.

Authors:  ShengTao Zhou; Rui Liu; Xia Zhao; CanHua Huang; YuQuan Wei
Journal:  Sci China Life Sci       Date:  2011-06-26       Impact factor: 6.038

Review 7.  Mass spectrometry based proteomic studies on viruses and hosts--a review.

Authors:  Jie Zheng; Richard J Sugrue; Kai Tang
Journal:  Anal Chim Acta       Date:  2011-06-30       Impact factor: 6.558

  7 in total

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