Literature DB >> 18922230

Evaluation of functional gene enrichment in a soil metagenomic clone library.

Sandrine Demanèche1, Maude M David, Elisabeth Navarro, Pascal Simonet, Timothy M Vogel.   

Abstract

We evaluated the use of mixed oligonucleotide probes hybridized to metagenomic clones spotted on high density membranes. The pooled probes included oligonucleotides designed for genes associated with denitrification, antibiotic resistance, and dehalogenation among others. Pyrosequence comparison between the clones and the original DNA demonstrated the utility of clone screening with pooled probes.

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Year:  2008        PMID： 18922230     DOI： 10.1016/j.mimet.2008.09.009

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN： 0167-7012            Impact factor:   2.363


  3 in total

1.  Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach.

Authors:  Sandrine Demanèche; Laurent Philippot; Maude M David; Elisabeth Navarro; Timothy M Vogel; Pascal Simonet
Journal:  Appl Environ Microbiol       Date:  2008-11-14       Impact factor: 4.792

2.  Signal processing for metagenomics: extracting information from the soup.

Authors:  Gail L Rosen; Bahrad A Sokhansanj; Robi Polikar; Mary Ann Bruns; Jacob Russell; Elaine Garbarine; Steve Essinger; Non Yok
Journal:  Curr Genomics       Date:  2009-11       Impact factor: 2.236

3.  Bacterial community analysis on Sclerotium-suppressive soil.

Authors:  R Thilagavathi; S Nakkeeran; D Balachandar; T Raguchander; R Samiyappan
Journal:  Arch Microbiol       Date:  2021-06-21       Impact factor: 2.552
  3 in total

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