Literature DB >> 18855421

Allosteric regulation of Bacillus subtilis threonine deaminase, a biosynthetic threonine deaminase with a single regulatory domain.

Anat Shulman1, Elena Zalyapin, Maria Vyazmensky, Ofer Yifrach, Ze'ev Barak, David M Chipman.   

Abstract

The enzyme threonine deaminase (TD) is a key regulatory enzyme in the pathway for the biosynthesis of isoleucine. TD is inhibited by its end product, isoleucine, and this effect is countered by valine, the product of a competing biosynthetic pathway. Sequence and structure analyses have revealed that the protomers of many TDs have C-terminal regulatory domains, composed of two ACT-like subdomains, which bind isoleucine and valine, while others have regulatory domains of approximately half the length, composed of only a single ACT-like domain. The regulatory responses of TDs from both long and short sequence varieties appear to have many similarities, but there are significant differences. We describe here the allosteric properties of Bacillus subtilis TD ( bsTD), which belongs to the short variety of TD sequences. We also examine the effects of several mutations in the regulatory domain on the kinetics of the enzyme and its response to effectors. The behavior of bsTD can be analyzed and rationalized using a modified Monod-Wyman-Changeux model. This analysis suggests that isoleucine is a negative effector, and valine is a very weak positive effector, but that at high concentrations valine inhibits activity by competing with threonine for binding to the active site. The behavior of bsTD is contrasted with the allosteric behavior reported for TDs from Escherichia coli and Arabidopsis thaliana, TDs with two subdomains. We suggest a possible evolutionary pathway to the more complex regulatory effects of valine on the activity of TDs of the long sequence variety, e.g., E. coli TD.

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Year:  2008        PMID: 18855421     DOI: 10.1021/bi800901n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

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5.  Identification and biochemical characterization of threonine dehydratase from the hyperthermophile Thermotoga maritima.

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6.  Molecular Dynamics-Based Allosteric Prediction Method to Design Key Residues in Threonine Dehydrogenase for Amino-Acid Production.

Authors:  Mingyu Wu; Yu Sun; Meiru Zhu; Laiyu Zhu; Junhong Lü; Feng Geng
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7.  Repression of branched-chain amino acid synthesis in Staphylococcus aureus is mediated by isoleucine via CodY, and by a leucine-rich attenuator peptide.

Authors:  Julienne C Kaiser; Alyssa N King; Jason C Grigg; Jessica R Sheldon; David R Edgell; Michael E P Murphy; Shaun R Brinsmade; David E Heinrichs
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9.  The role of ACT-like subdomain in bacterial threonine dehydratases.

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Journal:  PLoS One       Date:  2014-01-24       Impact factor: 3.240

10.  Molecular evolution of threonine dehydratase in bacteria.

Authors:  Xuefei Yu; Ye Li; Xiaoyuan Wang
Journal:  PLoS One       Date:  2013-12-04       Impact factor: 3.240

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