Literature DB >> 18855376

Bioinorganic chemistry modeled with the TPSSh density functional.

Kasper P Jensen1.   

Abstract

In this work, the TPSSh density functional has been benchmarked against a test set of experimental structures and bond energies for 80 transition-metal-containing diatomics. It is found that the TPSSh functional gives structures of the same quality as other commonly used hybrid and nonhybrid functionals such as B3LYP and BP86. TPSSh gives a slope of 0.99 upon linear fitting to experimental bond energies, whereas B3LYP and BP86, representing 20% and 0% exact exchange, respectively, give linear fits with slopes of 0.91 and 1.07. Thus, TPSSh eliminates the large systematic component of the error in other functionals, reducing rms errors from 46-57 to 34 kJ/mol. The nonhybrid version of the functional, TPSS, gives a slope of 1.08, similar to BP86, implying that using 10% exact exchange is the main reason for the success of TPSSh. Typical bioinorganic reactions were then investigated, including spin inversion and electron affinity in iron-sulfur clusters, and breaking or formation of bonds in iron proteins and cobalamins. The results show that differences in reaction energies due to exact exchange can be much larger than the usually cited approximately 20 kJ/mol, sometimes exceeding 100 kJ/mol. The TPSSh functional provides energies approximately halfway between nonhybrids BP86 and TPSS, and 20% exact exchange hybrid B3LYP: Thus, a linear correlation between the amount of exact exchange and the numeric value of the reaction energy is observed in all these cases. For these reasons, TPSSh stands out as a most promising density functional for use and further development within the field of bioinorganic chemistry.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18855376     DOI: 10.1021/ic800841t

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  9 in total

1.  DFT calculations for intermediate and active states of the diiron center with a tryptophan or tyrosine radical in Escherichia coli ribonucleotide reductase.

Authors:  Wen-Ge Han; Louis Noodleman
Journal:  Inorg Chem       Date:  2011-02-15       Impact factor: 5.165

2.  Theoretical studies of organotin(IV) complexes derived from ONO-donor type schiff base ligands.

Authors:  Gökhan Şirikci; Nilgün Ataünal Ancın; Selma Gül Öztaş
Journal:  J Mol Model       Date:  2015-08-06       Impact factor: 1.810

3.  Iron-catalysed synthesis and chemical recycling of telechelic 1,3-enchained oligocyclobutanes.

Authors:  Megan Mohadjer Beromi; C Rose Kennedy; Jarod M Younker; Alex E Carpenter; Sarah J Mattler; Joseph A Throckmorton; Paul J Chirik
Journal:  Nat Chem       Date:  2021-01-25       Impact factor: 24.427

4.  Versatile Reactivity of MnII Complexes in Reactions with N-Donor Heterocycles: Metamorphosis of Labile Homometallic Pivalates vs. Assembling of Endurable Heterometallic Acetates.

Authors:  Ruslan A Polunin; Igor S Evstifeev; Olivier Cador; Stéphane Golhen; Konstantin S Gavrilenko; Anton S Lytvynenko; Nikolay N Efimov; Vadim V Minin; Artem S Bogomyakov; Lahcène Ouahab; Sergey V Kolotilov; Mikhail A Kiskin; Igor L Eremenko
Journal:  Molecules       Date:  2021-02-15       Impact factor: 4.411

5.  Mechanistic insights into dioxygen activation by a manganese corrole complex: a broken-symmetry DFT study.

Authors:  Jiangfeng Yu; Wenzhen Lai
Journal:  RSC Adv       Date:  2021-07-16       Impact factor: 4.036

Review 6.  Density functional theory.

Authors:  Maylis Orio; Dimitrios A Pantazis; Frank Neese
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

7.  Charge accumulation kinetics in multi-redox molecular catalysts immobilised on TiO2.

Authors:  Carlota Bozal-Ginesta; Camilo A Mesa; Annika Eisenschmidt; Laia Francàs; Ravi B Shankar; Daniel Antón-García; Julien Warnan; Janina Willkomm; Anna Reynal; Erwin Reisner; James R Durrant
Journal:  Chem Sci       Date:  2020-11-10       Impact factor: 9.825

8.  QM/MM Investigation of the Role of a Second Coordination Shell Arginine in [NiFe]-Hydrogenases.

Authors:  Andrés M Escorcia; Matthias Stein
Journal:  Front Chem       Date:  2018-05-15       Impact factor: 5.221

9.  A model for dinitrogen binding in the E4 state of nitrogenase.

Authors:  Albert Th Thorhallsson; Bardi Benediktsson; Ragnar Bjornsson
Journal:  Chem Sci       Date:  2019-10-15       Impact factor: 9.825

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.