Literature DB >> 18851709

Dynamics of liquids, molecules, and proteins measured with ultrafast 2D IR vibrational echo chemical exchange spectroscopy.

M D Fayer1.   

Abstract

A wide variety of molecular systems undergo fast structural changes under thermal equilibrium conditions. Such transformations are involved in a vast array of chemical problems. Experimentally measuring equilibrium dynamics is a challenging problem that is at the forefront of chemical research. This review describes ultrafast 2D IR vibrational echo chemical exchange experiments and applies them to several types of molecular systems. The formation and dissociation of organic solute-solvent complexes are directly observed. The dissociation times of 13 complexes, ranging from 4 ps to 140 ps, are shown to obey a relationship that depends on the complex's formation enthalpy. The rate of rotational gauche-trans isomerization around a carbon-carbon single bond is determined for a substituted ethane at room temperature in a low viscosity solvent. The results are used to obtain an approximate isomerization rate for ethane. Finally, the time dependence of a well-defined single structural transformation of a protein is measured.

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Year:  2009        PMID: 18851709     DOI: 10.1146/annurev-physchem-073108-112712

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  24 in total

1.  Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy.

Authors:  Chris T Middleton; Ann Marie Woys; Sudipta S Mukherjee; Martin T Zanni
Journal:  Methods       Date:  2010-05-22       Impact factor: 3.608

2.  2D IR cross peaks reveal hydrogen-deuterium exchange with single residue specificity.

Authors:  Emily B Dunkelberger; Ann Marie Woys; Martin T Zanni
Journal:  J Phys Chem B       Date:  2013-05-23       Impact factor: 2.991

Review 3.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

4.  Implementing electrostatic polarization cannot fill the gap between experimental and theoretical measurements for the ultrafast fluorescence decay of myoglobin.

Authors:  Bingbing Lin; Ya Gao; Yongxiu Li; John Z H Zhang; Ye Mei
Journal:  J Mol Model       Date:  2014-03-27       Impact factor: 1.810

5.  Chemical exchange induced Hahn echo modulation in pulsed electron paramagnetic resonance experiment.

Authors:  Andrey A Bobko
Journal:  J Magn Reson       Date:  2020-05-16       Impact factor: 2.229

6.  Enhanced vibrational solvatochromism and spectral diffusion by electron rich substituents on small molecule silanes.

Authors:  Courtney M Olson; Adam Grofe; Christopher J Huber; Ivan C Spector; Jiali Gao; Aaron M Massari
Journal:  J Chem Phys       Date:  2017-09-28       Impact factor: 3.488

7.  Site-Specific 1D and 2D IR Spectroscopy to Characterize the Conformations and Dynamics of Protein Molecular Recognition.

Authors:  Sashary Ramos; Megan C Thielges
Journal:  J Phys Chem B       Date:  2019-03-21       Impact factor: 2.991

8.  Time-dependent fifth-order bands in nominally third-order 2D IR vibrational echo spectra.

Authors:  Megan C Thielges; Michael D Fayer
Journal:  J Phys Chem A       Date:  2011-06-07       Impact factor: 2.781

9.  Extended timescale 2D IR probes of proteins: p-cyanoselenophenylalanine.

Authors:  S Ramos; K J Scott; R E Horness; A L Le Sueur; M C Thielges
Journal:  Phys Chem Chem Phys       Date:  2017-04-12       Impact factor: 3.676

10.  Selective characterization of microsecond motions in proteins by NMR relaxation.

Authors:  D Flemming Hansen; Haniqiao Feng; Zheng Zhou; Yawen Bai; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2009-11-11       Impact factor: 15.419

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