Literature DB >> 18851630

Efficient formalism for large-scale ab initio molecular dynamics based on time-dependent density functional theory.

J L Alonso1, X Andrade, P Echenique, F Falceto, D Prada-Gracia, A Rubio.   

Abstract

A new "on the fly" method to perform Born-Oppenheimer ab initio molecular dynamics (AIMD) simulations is presented. Inspired by Ehrenfest dynamics in time-dependent density functional theory, the electronic orbitals are evolved by a Schrödinger-like equation, where the orbital time derivative is multiplied by a parameter. This parameter controls the time scale of the fictitious electronic motion and speeds up the calculations with respect to standard Ehrenfest dynamics. In contrast with other methods, wave function orthogonality needs not be imposed as it is automatically preserved, which is of paramount relevance for large-scale AIMD simulations.

Entities:  

Year:  2008        PMID: 18851630     DOI: 10.1103/PhysRevLett.101.096403

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Application of compressed sensing to the simulation of atomic systems.

Authors:  Xavier Andrade; Jacob N Sanders; Alán Aspuru-Guzik
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-13       Impact factor: 11.205

2.  Lagrangian formulation with dissipation of Born-Oppenheimer molecular dynamics using the density-functional tight-binding method.

Authors:  Guishan Zheng; Anders M N Niklasson; Martin Karplus
Journal:  J Chem Phys       Date:  2011-07-28       Impact factor: 3.488

3.  An exact expression to calculate the derivatives of position-dependent observables in molecular simulations with flexible constraints.

Authors:  Pablo Echenique; Claudio N Cavasotto; Monica De Marco; Pablo Garca-Risueño; J L Alonso
Journal:  PLoS One       Date:  2011-09-12       Impact factor: 3.240

4.  Ab-Initio Molecular Dynamics Simulation of Condensed-Phase Reactivity: The Electrolysis of Amino Acids and Peptides.

Authors:  Ali Kiakojouri; Ebrahim Nadimi; Irmgard Frank
Journal:  Molecules       Date:  2020-11-19       Impact factor: 4.411

5.  Manipulating Weyl quasiparticles by orbital-selective photoexcitation in WTe2.

Authors:  Meng-Xue Guan; En Wang; Pei-Wei You; Jia-Tao Sun; Sheng Meng
Journal:  Nat Commun       Date:  2021-03-25       Impact factor: 14.919

6.  Creation of a novel inverted charge density wave state.

Authors:  Yingchao Zhang; Xun Shi; Mengxue Guan; Wenjing You; Yigui Zhong; Tika R Kafle; Yaobo Huang; Hong Ding; Michael Bauer; Kai Rossnagel; Sheng Meng; Henry C Kapteyn; Margaret M Murnane
Journal:  Struct Dyn       Date:  2022-01-13       Impact factor: 2.920

7.  Conditional Wave Function Theory: A Unified Treatment of Molecular Structure and Nonadiabatic Dynamics.

Authors:  Guillermo Albareda; Kevin Lively; Shunsuke A Sato; Aaron Kelly; Angel Rubio
Journal:  J Chem Theory Comput       Date:  2021-11-09       Impact factor: 6.006

8.  Quantum coherence controls the charge separation in a prototypical artificial light-harvesting system.

Authors:  Carlo Andrea Rozzi; Sarah Maria Falke; Nicola Spallanzani; Angel Rubio; Elisa Molinari; Daniele Brida; Margherita Maiuri; Giulio Cerullo; Heiko Schramm; Jens Christoffers; Christoph Lienau
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

Review 9.  Enhanced conformational sampling to visualize a free-energy landscape of protein complex formation.

Authors:  Shinji Iida; Haruki Nakamura; Junichi Higo
Journal:  Biochem J       Date:  2016-06-15       Impact factor: 3.857

  9 in total

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