Literature DB >> 18851459

Studies of phononlike low-energy excitations of protein molecules by inelastic x-ray scattering.

Dazhi Liu1, Xiang-qiang Chu, Marco Lagi, Yang Zhang, Emiliano Fratini, Piero Baglioni, Ahmet Alatas, Ayman Said, Ercan Alp, Sow-Hsin Chen.   

Abstract

Molecular dynamics simulations and neutron scattering experiments have shown that many hydrated globular proteins exhibit a universal dynamic transition at TD = 220 K, below which the biological activity of a protein sharply diminishes. We studied the phononlike low-energy excitations of two structurally very different proteins, lysozyme and bovine serum albumin, using inelastic x-ray scattering above and below TD. We found that the excitation energies of the high-Q phonons show a marked softening above TD. This suggests that the large amplitude motions of wavelengths corresponding to this specific Q range are intimately correlated with the increase of biological activities of the proteins.

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Year:  2008        PMID: 18851459     DOI: 10.1103/PhysRevLett.101.135501

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  8 in total

1.  Functional domain motions in proteins on the ~1-100 ns timescale: comparison of neutron spin-echo spectroscopy of phosphoglycerate kinase with molecular-dynamics simulation.

Authors:  N Smolin; R Biehl; G R Kneller; D Richter; J C Smith
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Coherent neutron scattering and collective dynamics in the protein, GFP.

Authors:  Jonathan D Nickels; Stefania Perticaroli; Hugh O'Neill; Qiu Zhang; Georg Ehlers; Alexei P Sokolov
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

3.  Moving in the Right Direction: Protein Vibrations Steering Function.

Authors:  Katherine A Niessen; Mengyang Xu; Alessandro Paciaroni; Andrea Orecchini; Edward H Snell; Andrea G Markelz
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

4.  Evidence of protein collective motions on the picosecond timescale.

Authors:  Yunfen He; J-Y Chen; J R Knab; Wenjun Zheng; A G Markelz
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

5.  Inelastic X-ray scattering of a transition-metal complex (FeCl4(-)): vibrational spectroscopy for all normal modes.

Authors:  Weibing Dong; Hongxin Wang; Marilyn M Olmstead; James C Fettinger; Jay Nix; Hiroshi Uchiyama; Satoshi Tsutsui; Alfred Q R Baron; Eric Dowty; Stephen P Cramer
Journal:  Inorg Chem       Date:  2013-05-13       Impact factor: 5.165

6.  High-energy-resolution inelastic X-ray scattering spectrometer at beamline 30-ID of the Advanced Photon Source.

Authors:  Ayman H Said; Harald Sinn; Thomas S Toellner; Ercan E Alp; Thomas Gog; Bogdan M Leu; Sunil Bean; Ahmet Alatas
Journal:  J Synchrotron Radiat       Date:  2020-04-06       Impact factor: 2.616

7.  Fifth-order time-domain Raman spectroscopy of photoactive yellow protein for visualizing vibrational coupling in its excited state.

Authors:  Hikaru Kuramochi; Satoshi Takeuchi; Hironari Kamikubo; Mikio Kataoka; Tahei Tahara
Journal:  Sci Adv       Date:  2019-06-07       Impact factor: 14.136

8.  Experimental mapping of short-wavelength phonons in proteins.

Authors:  Utsab R Shrestha; Eugene Mamontov; Hugh M O'Neill; Qiu Zhang; Alexander I Kolesnikov; Xiangqiang Chu
Journal:  Innovation (Camb)       Date:  2021-12-17
  8 in total

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