Literature DB >> 18850860

Pinpointing connectivity despite hidden nodes within stimulus-driven networks.

Duane Q Nykamp1.   

Abstract

The effects of hidden nodes can lead to erroneous identification of connections among measured nodes in a network. For example, common input from a hidden node may cause correlations among a pair of measured nodes that could be misinterpreted as arising from a direct connection between the measured nodes. We present an approach to control for effects of hidden nodes in networks driven by a repeated stimulus. We demonstrate the promise of this approach via simulations of small networks of neurons driven by a visual stimulus.

Year:  2008        PMID: 18850860     DOI: 10.1103/PhysRevE.78.021902

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  8 in total

1.  Bayesian inference for generalized linear models for spiking neurons.

Authors:  Sebastian Gerwinn; Jakob H Macke; Matthias Bethge
Journal:  Front Comput Neurosci       Date:  2010-05-28       Impact factor: 2.380

2.  A stimulus-dependent connectivity analysis of neuronal networks.

Authors:  Duane Q Nykamp
Journal:  J Math Biol       Date:  2008-10-02       Impact factor: 2.259

3.  Multineuronal activity patterns identify selective synaptic connections under realistic experimental constraints.

Authors:  Brendan Chambers; Jason N MacLean
Journal:  J Neurophysiol       Date:  2015-07-22       Impact factor: 2.714

4.  Denoising neural data with state-space smoothing: method and application.

Authors:  Hariharan Nalatore; Mingzhou Ding; Govindan Rangarajan
Journal:  J Neurosci Methods       Date:  2009-01-22       Impact factor: 2.390

5.  How structure determines correlations in neuronal networks.

Authors:  Volker Pernice; Benjamin Staude; Stefano Cardanobile; Stefan Rotter
Journal:  PLoS Comput Biol       Date:  2011-05-19       Impact factor: 4.475

6.  Incremental mutual information: a new method for characterizing the strength and dynamics of connections in neuronal circuits.

Authors:  Abhinav Singh; Nicholas A Lesica
Journal:  PLoS Comput Biol       Date:  2010-12-09       Impact factor: 4.475

7.  Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data.

Authors:  Daniel Soudry; Suraj Keshri; Patrick Stinson; Min-Hwan Oh; Garud Iyengar; Liam Paninski
Journal:  PLoS Comput Biol       Date:  2015-10-14       Impact factor: 4.475

8.  Predicting how and when hidden neurons skew measured synaptic interactions.

Authors:  Braden A W Brinkman; Fred Rieke; Eric Shea-Brown; Michael A Buice
Journal:  PLoS Comput Biol       Date:  2018-10-22       Impact factor: 4.475

  8 in total

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