Literature DB >> 18848992

Crystallographic studies of DNA and RNA.

Blaine H M Mooers1.   

Abstract

Our knowledge of nucleic acid structure grew rapidly over the past decade with the determination to high resolution of larger structures of great biological significance. Advances in sample preparation, crystallization techniques, cryocrystallography, access to synchrotron radiation, and crystallographic software continue to accelerate the structure determination of nucleic acids. Crystallographic studies of DNA and RNA molecules share many considerations that we outline here. The application of crystallography to RNA is illustrated with the structure determination of the CUG repeat that is linked to type I myotonic dystrophy.

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Year:  2008        PMID: 18848992     DOI: 10.1016/j.ymeth.2008.09.006

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  11 in total

1.  Site-specific platinum(II) cross-linking in a ribozyme active site.

Authors:  Erich G Chapman; Victoria J DeRose
Journal:  J Am Chem Soc       Date:  2011-12-14       Impact factor: 15.419

2.  Solution structure of RNase P RNA.

Authors:  Alexei V Kazantsev; Robert P Rambo; Sina Karimpour; John Santalucia; John A Tainer; Norman R Pace
Journal:  RNA       Date:  2011-04-29       Impact factor: 4.942

Review 3.  Toward an Expanded Genome: Structural and Computational Characterization of an Artificially Expanded Genetic Information System.

Authors:  Nigel G J Richards; Millie M Georgiadis
Journal:  Acc Chem Res       Date:  2017-06-08       Impact factor: 22.384

4.  A statistical thermodynamic model for investigating the stability of DNA sequences from oligonucleotides to genomes.

Authors:  Garima Khandelwal; Rebecca A Lee; B Jayaram; David L Beveridge
Journal:  Biophys J       Date:  2014-06-03       Impact factor: 4.033

5.  Incorporation and Utility of a Responsive Ribonucleoside Analogue in Probing the Conformation of a Viral RNA Motif by Fluorescence and 19 F NMR Spectroscopy.

Authors:  Sudeshna Manna; Vyankat A Sontakke; Seergazhi G Srivatsan
Journal:  Chembiochem       Date:  2021-12-07       Impact factor: 3.461

6.  Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA.

Authors:  Venu Gopal Vandavasi; Matthew P Blakeley; David A Keen; Lillian R Hu; Zhen Huang; Andrey Kovalevsky
Journal:  Structure       Date:  2018-09-20       Impact factor: 5.006

7.  Crystallographic Pursuit of a Protein-RNA Aptamer Complex.

Authors:  John J G Tesmer
Journal:  Methods Mol Biol       Date:  2016

8.  Reversed-phase ion-pair liquid chromatography method for purification of duplex DNA with single base pair resolution.

Authors:  Christina L Wysoczynski; Sarah C Roemer; Vishantie Dostal; Robert M Barkley; Mair E A Churchill; Christopher S Malarkey
Journal:  Nucleic Acids Res       Date:  2013-09-05       Impact factor: 16.971

9.  TEMPO-derived spin labels linked to the nucleobases adenine and cytosine for probing local structural perturbations in DNA by EPR spectroscopy.

Authors:  Dnyaneshwar B Gophane; Snorri Th Sigurdsson
Journal:  Beilstein J Org Chem       Date:  2015-02-09       Impact factor: 2.883

Review 10.  An overview of biological macromolecule crystallization.

Authors:  Irene Russo Krauss; Antonello Merlino; Alessandro Vergara; Filomena Sica
Journal:  Int J Mol Sci       Date:  2013-05-31       Impact factor: 5.923

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