Literature DB >> 18845580

FABSIM: a software for generating FST distributions with various ascertainment biases.

Anna Ramírez-Soriano1, Francesc Calafell.   

Abstract

UNLABELLED: We have developed a software that applies ascertainment bias on simulated DNA sequences and calculates F(ST) on them, so they can be used to generate neutral distributions that are appropriate to test whether the genetic differentiation of a particular gene between populations is compatible with neutral evolution, or, on the contrary, suggests local adaptation by natural selection. AVAILABILITY: FABSIM is available from http://www.snpator.com/public/downloads/aRamirez/FABSIM/.

Mesh:

Year:  2008        PMID: 18845580     DOI: 10.1093/bioinformatics/btn531

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  Cereal domestication and evolution of branching: evidence for soft selection in the Tb1 orthologue of pearl millet (Pennisetum glaucum [L.] R. Br.).

Authors:  Marie-Stanislas Remigereau; Ghayas Lakis; Samah Rekima; Magalie Leveugle; Michaël C Fontaine; Thierry Langin; Aboubakry Sarr; Thierry Robert
Journal:  PLoS One       Date:  2011-07-22       Impact factor: 3.240

2.  Evolution of neutral and flowering genes along pearl millet (Pennisetum glaucum) domestication.

Authors:  Ghayas Lakis; Miguel Navascués; Samah Rekima; Mathieu Simon; Marie-Stanislas Remigereau; Magalie Leveugle; Najat Takvorian; Françoise Lamy; Frantz Depaulis; Thierry Robert
Journal:  PLoS One       Date:  2012-05-14       Impact factor: 3.240

3.  Estimating and interpreting FST: the impact of rare variants.

Authors:  Gaurav Bhatia; Nick Patterson; Sriram Sankararaman; Alkes L Price
Journal:  Genome Res       Date:  2013-07-16       Impact factor: 9.043

4.  dbPSHP: a database of recent positive selection across human populations.

Authors:  Mulin Jun Li; Lily Yan Wang; Zhengyuan Xia; Maria P Wong; Pak Chung Sham; Junwen Wang
Journal:  Nucleic Acids Res       Date:  2013-11-04       Impact factor: 16.971

  4 in total

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