Literature DB >> 18842603

CNVDetector: locating copy number variations using array CGH data.

Peng-An Chen1, Hsiao-Fei Liu, Kun-Mao Chao.   

Abstract

UNLABELLED: CNVDetector is a program for locating copy number variations (CNVs) in a single genome. CNVDetector has several merits: (i) it can deal with the array comparative genomic hybridization data even if the noise is not normally distributed; (ii) it has a linear time kernel; (iii) its parameters can be easily selected; (iv) it evaluates the statistical significance for each CNV calling. AVAILABILITY: CNVDetector (for Windows platform) can be downloaded from http:www.csie.ntu.edu.tw/~kmchao/tools/CNVDetector/. The manual of CNVDetector is also available.

Mesh：

Year:  2008        PMID： 18842603     DOI： 10.1093/bioinformatics/btn517

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

1.  Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions.

Authors:  Dan He; Farhad Hormozdiari; Nicholas Furlotte; Eleazar Eskin
Journal:  Bioinformatics       Date:  2011-04-19       Impact factor: 6.937

2.  Modified screening and ranking algorithm for copy number variation detection.

Authors:  Feifei Xiao; Xiaoyi Min; Heping Zhang
Journal:  Bioinformatics       Date:  2014-12-25       Impact factor: 6.937

3.  CNVeM: copy number variation detection using uncertainty of read mapping.

Authors:  Zhanyong Wang; Farhad Hormozdiari; Wen-Yun Yang; Eran Halperin; Eleazar Eskin
Journal:  J Comput Biol       Date:  2013-02-19       Impact factor: 1.479

4.  waviCGH: a web application for the analysis and visualization of genomic copy number alterations.

Authors:  Angel Carro; Daniel Rico; Oscar M Rueda; Ramón Díaz-Uriarte; David G Pisano
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

5.  ParseCNV integrative copy number variation association software with quality tracking.

Authors:  Joseph T Glessner; Jin Li; Hakon Hakonarson
Journal:  Nucleic Acids Res       Date:  2013-01-04       Impact factor: 16.971

6.  Detection and reconstruction of tandemly organized de novo copy number variations.

Authors:  Dan He; Nicholas Furlotte; Eleazar Eskin
Journal:  BMC Bioinformatics       Date:  2010-12-14       Impact factor: 3.169

7.  CNVVdb: a database of copy number variations across vertebrate genomes.

Authors:  Feng-Chi Chen; Yen-Zho Chen; Trees-Juen Chuang
Journal:  Bioinformatics       Date:  2009-03-25       Impact factor: 6.937

8.  Whole-genome sequences of DA and F344 rats with different susceptibilities to arthritis, autoimmunity, inflammation and cancer.

Authors:  Xiaosen Guo; Max Brenner; Xuemei Zhang; Teresina Laragione; Shuaishuai Tai; Yanhong Li; Junjie Bu; Ye Yin; Anish A Shah; Kevin Kwan; Yingrui Li; Wang Jun; Pércio S Gulko
Journal:  Genetics       Date:  2013-05-20       Impact factor: 4.562
  8 in total

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