Literature DB >> 18838095

Identification of a novel DPA1 allele, DPA1*010602, in an East African population.

Trevor A Peterson1, Ma Luo, Xiaojuan Mao, Robert C Brunham, Francis A Plummer.   

Abstract

We report here a novel DPA1 allele, DPA1*010602, which was identified from an East African population during sequence-based human leukocyte antigen DPA1 typing. Through cloning and sequencing of multiple clones we confirmed that the new allele is identical to DPA1*010301 at exon 2 with the exception of two nucleotide substitutions (ATG to CAG) at codon 31. The substitutions changed the amino acid at codon 31 from methionine to glutamine. The World Health Organization nomenclature committee named the new allele DPA1*010602.

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Year:  2008        PMID： 18838095      PMCID： PMC2628164          DOI： 10.1016/j.humimm.2008.09.001

Source DB:  PubMed          Journal:  Hum Immunol        ISSN： 0198-8859            Impact factor:   2.850


  8 in total

1.  IMGT/HLA database--a sequence database for the human major histocompatibility complex.

Authors:  J Robinson; A Malik; P Parham; J G Bodmer; S G Marsh
Journal:  Tissue Antigens       Date:  2000-03

2.  Nomenclature for factors of the HLA system, 2004.

Authors:  S G E Marsh; E D Albert; W F Bodmer; R E Bontrop; B Dupont; H A Erlich; D E Geraghty; J A Hansen; C K Hurley; B Mach; W R Mayr; P Parham; E W Petersdorf; T Sasazuki; G M Th Schreuder; J L Strominger; A Svejgaard; P I Terasaki; J Trowsdale
Journal:  Tissue Antigens       Date:  2005-04

3.  High-resolution sequence typing of HLA-DQA1 and -DQB1 exon 2 DNA with taxonomy-based sequence analysis (TBSA) allele assignment.

Authors:  M Luo; J Blanchard; Y Pan; K Brunham; R C Brunham
Journal:  Tissue Antigens       Date:  1999-07

4.  [Studies on the association of human leukocyte antigen class II alleles with advanced hepatosplenic schistosomiasis japonica].

Authors:  Jun-hua Zhang; Wen-qi Liu; Yong-long Li; Xiao-chun Long
Journal:  Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi       Date:  2005-02-28

5.  Two-step high resolution sequence-based HLA-DRB typing of exon 2 DNA with taxonomy-based sequence analysis allele assignment.

Authors:  M Luo; J Blanchard; K Brunham; Y Pan; C X Shen; H Lu; R C Brunham
Journal:  Hum Immunol       Date:  2001-11       Impact factor: 2.850

6.  Investigation of HLA-DPA1 genotypes as predictors of inflammatory bowel disease in the German, South African, and South Korean populations.

Authors:  Annette Lantermann; Jochen Hampe; Won H Kim; Trevor A Winter; Mark Kidd; Marion Nagy; Ulrich R Fölsch; Stefan Schreiber
Journal:  Int J Colorectal Dis       Date:  2001-12-21       Impact factor: 2.571

Review 7.  Expression of MHC II genes.

Authors:  G Drozina; J Kohoutek; N Jabrane-Ferrat; B M Peterlin
Journal:  Curr Top Microbiol Immunol       Date:  2005       Impact factor: 4.291

8.  IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex.

Authors:  James Robinson; Matthew J Waller; Peter Parham; Natasja de Groot; Ronald Bontrop; Lorna J Kennedy; Peter Stoehr; Steven G E Marsh
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971
  8 in total
  3 in total

Review 1.  Nomenclature for factors of the HLA system, 2010.

Authors:  S G E Marsh; E D Albert; W F Bodmer; R E Bontrop; B Dupont; H A Erlich; M Fernández-Viña; D E Geraghty; R Holdsworth; C K Hurley; M Lau; K W Lee; B Mach; M Maiers; W R Mayr; C R Müller; P Parham; E W Petersdorf; T Sasazuki; J L Strominger; A Svejgaard; P I Terasaki; J M Tiercy; J Trowsdale
Journal:  Tissue Antigens       Date:  2010-04

2.  A combined DPA1~DPB1 amino acid epitope is the primary unit of selection on the HLA-DP heterodimer.

Authors:  Jill A Hollenbach; Abeer Madbouly; Loren Gragert; Cynthia Vierra-Green; Susan Flesch; Stephen Spellman; Ann Begovich; Harriet Noreen; Elizabeth Trachtenberg; Tom Williams; Neng Yu; Bronwen Shaw; Katharina Fleischhauer; Marcelo Fernandez-Vina; Martin Maiers
Journal:  Immunogenetics       Date:  2012-04-13       Impact factor: 2.846

3.  Prediction of HLA class II alleles using SNPs in an African population.

Authors:  Fasil Tekola Ayele; Fasil Tekola Ayele; Elena Hailu; Chris Finan; Abraham Aseffa; Gail Davey; Melanie J Newport; Charles N Rotimi; Adebowale Adeyemo
Journal:  PLoS One       Date:  2012-06-28       Impact factor: 3.240
  3 in total

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