Literature DB >> 18835809

Polymerase dynamics at the eukaryotic DNA replication fork.

Peter M J Burgers1.   

Abstract

This review discusses recent insights in the roles of DNA polymerases (Pol) delta and epsilon in eukaryotic DNA replication. A growing body of evidence specifies Pol epsilon as the leading strand DNA polymerase and Pol delta as the lagging strand polymerase during undisturbed DNA replication. New evidence supporting this model comes from the use of polymerase mutants that show an asymmetric mutator phenotype for certain mispairs, allowing an unambiguous strand assignment for these enzymes. On the lagging strand, Pol delta corrects errors made by Pol alpha during Okazaki fragment initiation. During Okazaki fragment maturation, the extent of strand displacement synthesis by Pol delta determines whether maturation proceeds by the short or long flap processing pathway. In the more common short flap pathway, Pol delta coordinates with the flap endonuclease FEN1 to degrade initiator RNA, whereas in the long flap pathway, RNA removal is initiated by the Dna2 nuclease/helicase.

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Year:  2008        PMID: 18835809      PMCID: PMC2640984          DOI: 10.1074/jbc.R800062200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  38 in total

1.  The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability.

Authors:  Y H Jin; R Obert; P M Burgers; T A Kunkel; M A Resnick; D A Gordenin
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

2.  The nuclease activity of the yeast DNA2 protein, which is related to the RecB-like nucleases, is essential in vivo.

Authors:  M E Budd; W c Choe; J L Campbell
Journal:  J Biol Chem       Date:  2000-06-02       Impact factor: 5.157

3.  Schizosaccharomyces pombe cells lacking the amino-terminal catalytic domains of DNA polymerase epsilon are viable but require the DNA damage checkpoint control.

Authors:  W Feng; G D'Urso
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

4.  RPA governs endonuclease switching during processing of Okazaki fragments in eukaryotes.

Authors:  S H Bae; K H Bae; J A Kim; Y S Seo
Journal:  Nature       Date:  2001-07-26       Impact factor: 49.962

5.  Okazaki fragment processing: modulation of the strand displacement activity of DNA polymerase delta by the concerted action of replication protein A, proliferating cell nuclear antigen, and flap endonuclease-1.

Authors:  G Maga; G Villani; V Tillement; M Stucki; G A Locatelli; I Frouin; S Spadari; U Hübscher
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

6.  Okazaki fragment maturation in yeast. II. Cooperation between the polymerase and 3'-5'-exonuclease activities of Pol delta in the creation of a ligatable nick.

Authors:  Yong Hwan Jin; Rao Ayyagari; Michael A Resnick; Dmitry A Gordenin; Peter M J Burgers
Journal:  J Biol Chem       Date:  2002-11-06       Impact factor: 5.157

7.  Characterization of the enzymatic properties of the yeast dna2 Helicase/endonuclease suggests a new model for Okazaki fragment processing.

Authors:  S H Bae; Y S Seo
Journal:  J Biol Chem       Date:  2000-12-01       Impact factor: 5.157

8.  The DNA polymerase domain of pol(epsilon) is required for rapid, efficient, and highly accurate chromosomal DNA replication, telomere length maintenance, and normal cell senescence in Saccharomyces cerevisiae.

Authors:  Tomoko Ohya; Yasuo Kawasaki; Shin-Ichiro Hiraga; Sakie Kanbara; Kou Nakajo; Naomi Nakashima; Akiko Suzuki; Akio Sugino
Journal:  J Biol Chem       Date:  2002-05-15       Impact factor: 5.157

9.  Evidence suggesting that Pif1 helicase functions in DNA replication with the Dna2 helicase/nuclease and DNA polymerase delta.

Authors:  Martin E Budd; Clara C Reis; Stephanie Smith; Kyungjae Myung; Judith L Campbell
Journal:  Mol Cell Biol       Date:  2006-04       Impact factor: 4.272

10.  Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects.

Authors:  José M Sogo; Massimo Lopes; Marco Foiani
Journal:  Science       Date:  2002-07-26       Impact factor: 47.728

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  188 in total

Review 1.  Okazaki fragment maturation: nucleases take centre stage.

Authors:  Li Zheng; Binghui Shen
Journal:  J Mol Cell Biol       Date:  2011-02       Impact factor: 6.216

2.  Early and late steps in telomere overhang processing in normal human cells: the position of the final RNA primer drives telomere shortening.

Authors:  Tracy T Chow; Yong Zhao; Sabrina S Mak; Jerry W Shay; Woodring E Wright
Journal:  Genes Dev       Date:  2012-06-01       Impact factor: 11.361

3.  Telomere end processing: unexpected complexity at the end game.

Authors:  Victoria Lundblad
Journal:  Genes Dev       Date:  2012-06-01       Impact factor: 11.361

4.  CDK-dependent complex formation between replication proteins Dpb11, Sld2, Pol (epsilon}, and GINS in budding yeast.

Authors:  Sachiko Muramatsu; Kazuyuki Hirai; Yon-Soo Tak; Yoichiro Kamimura; Hiroyuki Araki
Journal:  Genes Dev       Date:  2010-03-15       Impact factor: 11.361

5.  Differential correction of lagging-strand replication errors made by DNA polymerases {alpha} and {delta}.

Authors:  Stephanie A Nick McElhinny; Grace E Kissling; Thomas A Kunkel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

6.  An end for mismatch repair.

Authors:  Gray F Crouse
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-29       Impact factor: 11.205

Review 7.  Eukaryotic lagging strand DNA replication employs a multi-pathway mechanism that protects genome integrity.

Authors:  Lata Balakrishnan; Robert A Bambara
Journal:  J Biol Chem       Date:  2010-12-21       Impact factor: 5.157

8.  Dna2 exhibits a unique strand end-dependent helicase function.

Authors:  Lata Balakrishnan; Piotr Polaczek; Subhash Pokharel; Judith L Campbell; Robert A Bambara
Journal:  J Biol Chem       Date:  2010-10-06       Impact factor: 5.157

9.  PCNA accelerates the nucleotide incorporation rate by DNA polymerase δ.

Authors:  Tanumoy Mondol; Joseph L Stodola; Roberto Galletto; Peter M Burgers
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

10.  Significance of the dissociation of Dna2 by flap endonuclease 1 to Okazaki fragment processing in Saccharomyces cerevisiae.

Authors:  Jason A Stewart; Judith L Campbell; Robert A Bambara
Journal:  J Biol Chem       Date:  2009-01-29       Impact factor: 5.157

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