Literature DB >> 18834142

Structural basis for the heterotropic and homotropic interactions of invertebrate giant hemoglobin.

Nobutaka Numoto1, Taro Nakagawa, Akiko Kita, Yuichi Sasayama, Yoshihiro Fukumori, Kunio Miki.   

Abstract

The oxygen binding properties of extracellular giant hemoglobins (Hbs) in some annelids exhibit features significantly different from those of vertebrate tetrameric Hbs. Annelid giant Hbs show cooperative oxygen binding properties in the presence of inorganic cations, while the cooperativities of vertebrate Hbs are enhanced by small organic anions or chloride ions. To elucidate the structural basis for the cation-mediated cooperative mechanisms of these giant Hbs, we determined the crystal structures of Ca2+- and Mg2+-bound Hbs from Oligobrachia mashikoi at 1.6 and 1.7 A resolution, respectively. Both of the metal-bound structures were determined in the oxygenated state. Four Ca2+-binding sites and one Mg2+-binding site were identified in each tetramer subassembly. These cations are considered to stabilize the oxygenated form and increase affinity and cooperativity for oxygen binding, as almost all of the Ca2+ and Mg2+ cations were bound at the interface regions, forming either direct or hydrogen bond-mediated interactions with the neighboring subunits. A comparison of the structures of the oxygenated form and the partially unliganded form provides structural insight into proton-coupled cooperativity (Bohr effect) and ligand-induced transitions. Two histidine residues are assumed to be primarily associated with the Bohr effect. With regard to the ligand-induced cooperativity, a novel quaternary rotation mechanism is proposed to exist at the interface region of the dimer subassembly. Interactions among conserved residues Arg E10, His F3, Gln F7, and Val E11, together with the bending motion of the heme molecules, appear to be essential for quaternary rearrangement.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18834142     DOI: 10.1021/bi8012609

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  4 in total

1.  Evolution of Sulfur Binding by Hemoglobin in Siboglinidae (Annelida) with Special Reference to Bone-Eating Worms, Osedax.

Authors:  Damien S Waits; Scott R Santos; Daniel J Thornhill; Yuanning Li; Kenneth M Halanych
Journal:  J Mol Evol       Date:  2016-04-21       Impact factor: 2.395

2.  Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.

Authors:  Nobutaka Numoto; Seiko Onoda; Yoshiaki Kawano; Hideo Okumura; Seiki Baba; Yoshihiro Fukumori; Kunio Miki; Nobutoshi Ito
Journal:  Biophys Physicobiol       Date:  2022-05-12

3.  Anion-sensitive regions of L-type CaV1.2 calcium channels expressed in HEK293 cells.

Authors:  Norbert Babai; Nataly Kanevsky; Nathan Dascal; George J Rozanski; Dhirendra P Singh; Nigar Fatma; Wallace B Thoreson
Journal:  PLoS One       Date:  2010-01-06       Impact factor: 3.240

Review 4.  Conservation of the three-dimensional structure in non-homologous or unrelated proteins.

Authors:  Konstantinos Sousounis; Carl E Haney; Jin Cao; Bharath Sunchu; Panagiotis A Tsonis
Journal:  Hum Genomics       Date:  2012-08-02       Impact factor: 4.639

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.