Literature DB >> 18832065

Meeting DNA palindromes head-to-head.

Gerald R Smith1.   

Abstract

Particular DNA sequences have long been known to have exceptional structures and biological properties. Famous in the medical world are the trinucleotide repeat sequences, such as (CTG)(n), and their association with more than a dozen neurodegenerative diseases. Numerous meetings have been held to discuss these repeats and the diseases they cause. Now, a much-needed meeting has been held to discuss other noncanonical (non-B-form) DNA structures, their properties, and their biological consequences. Although the meeting was titled "DNA palindromes: roles, consequences, and implications of structurally ambivalent DNA," the participants discussed and debated a range of additional structures-dubbed "Z," "HJ," "G4," and "H" DNA-as well as trinucleotide repeats. These remarkable structures can have profound effects on chromosomes and organisms, ranging from mutational hotspots in bacteria to causes of intellectual disability in humans. Bringing together four dozen researchers prominent in the field focused attention on these controversial DNA structures in a way that promises to spur greater understanding of DNA elements critical to life and health.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18832065      PMCID: PMC2751023          DOI: 10.1101/gad.1724708

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  19 in total

Review 1.  Chromosomal translocations and palindromic AT-rich repeats.

Authors:  Takema Kato; Hiroki Kurahashi; Beverly S Emanuel
Journal:  Curr Opin Genet Dev       Date:  2012-03-06       Impact factor: 5.578

Review 2.  Non-B DNA structure-induced genetic instability and evolution.

Authors:  Junhua Zhao; Albino Bacolla; Guliang Wang; Karen M Vasquez
Journal:  Cell Mol Life Sci       Date:  2009-09-01       Impact factor: 9.261

3.  Generic Repeat Finder: A High-Sensitivity Tool for Genome-Wide De Novo Repeat Detection.

Authors:  Jieming Shi; Chun Liang
Journal:  Plant Physiol       Date:  2019-05-31       Impact factor: 8.340

4.  Dicentric breakage at telomere fusions.

Authors:  Sabrina Pobiega; Stéphane Marcand
Journal:  Genes Dev       Date:  2010-04-01       Impact factor: 11.361

Review 5.  Cruciform structures are a common DNA feature important for regulating biological processes.

Authors:  Václav Brázda; Rob C Laister; Eva B Jagelská; Cheryl Arrowsmith
Journal:  BMC Mol Biol       Date:  2011-08-05       Impact factor: 2.946

6.  Non-B DNA Secondary Structures and Their Resolution by RecQ Helicases.

Authors:  Sudha Sharma
Journal:  J Nucleic Acids       Date:  2011-10-02

7.  Symmetric exponential amplification reaction-based DNA nanomachine for the fluorescent detection of nucleic acids.

Authors:  Qi Yan; Qiuyue Duan; Yuqi Huang; Jing Guo; Liang Zhong; Hong Wang; Gang Yi
Journal:  RSC Adv       Date:  2019-12-13       Impact factor: 4.036

8.  Differential targeting of unpaired bases within duplex DNA by the natural compound clerocidin: a valuable tool to dissect DNA secondary structure.

Authors:  Matteo Nadai; Giorgio Palù; Manlio Palumbo; Sara N Richter
Journal:  PLoS One       Date:  2012-12-28       Impact factor: 3.240

9.  A method to find palindromes in nucleic acid sequences.

Authors:  Ramnath Anjana; Mani Shankar; Marthandan Kirti Vaishnavi; Kanagaraj Sekar
Journal:  Bioinformation       Date:  2013-03-02

10.  Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening.

Authors:  Barbara D'haene; Catia Attanasio; Diane Beysen; Josée Dostie; Edmond Lemire; Philippe Bouchard; Michael Field; Kristie Jones; Birgit Lorenz; Björn Menten; Karen Buysse; Filip Pattyn; Marc Friedli; Catherine Ucla; Colette Rossier; Carine Wyss; Frank Speleman; Anne De Paepe; Job Dekker; Stylianos E Antonarakis; Elfride De Baere
Journal:  PLoS Genet       Date:  2009-06-19       Impact factor: 5.917

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.