Literature DB >> 18830616

Quantitative microscopy and systems biology: seeing the whole picture.

Peter J Verveer1, Philippe I H Bastiaens.   

Abstract

Understanding cellular function requires studying the spatially resolved dynamics of protein networks. From the isolated proteins we can only learn about their individual properties, but by investigating their behavior in their natural environment, the cell, we obtain information about the overall response properties of the network module in which they operate. Fluorescence microscopy methods provide currently the only tools to study the dynamics of molecular processes in living cells with high temporal and spatial resolution. Combined with computational approaches they allow us to obtain insights in the reaction-diffusion processes that determine biological function on the scale of cells.

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Year:  2008        PMID: 18830616     DOI: 10.1007/s00418-008-0517-5

Source DB:  PubMed          Journal:  Histochem Cell Biol        ISSN: 0948-6143            Impact factor:   4.304


  72 in total

Review 1.  Imaging biochemistry inside cells.

Authors:  F S Wouters; P J Verveer; P I Bastiaens
Journal:  Trends Cell Biol       Date:  2001-05       Impact factor: 20.808

2.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

3.  Red-edge anisotropy microscopy enables dynamic imaging of homo-FRET between green fluorescent proteins in cells.

Authors:  Anthony Squire; Peter J Verveer; Oliver Rocks; Philippe I H Bastiaens
Journal:  J Struct Biol       Date:  2004-07       Impact factor: 2.867

Review 4.  Deep tissue two-photon microscopy.

Authors:  Fritjof Helmchen; Winfried Denk
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

5.  Single-molecule diffusion measurements of H-Ras at the plasma membrane of live cells reveal microdomain localization upon activation.

Authors:  Piet H M Lommerse; B Ewa Snaar-Jagalska; Herman P Spaink; Thomas Schmidt
Journal:  J Cell Sci       Date:  2005-05-01       Impact factor: 5.285

Review 6.  Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: high-speed single-molecule tracking of membrane molecules.

Authors:  Akihiro Kusumi; Chieko Nakada; Ken Ritchie; Kotono Murase; Kenichi Suzuki; Hideji Murakoshi; Rinshi S Kasai; Junko Kondo; Takahiro Fujiwara
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

Review 7.  High-throughput fluorescence microscopy for systems biology.

Authors:  Rainer Pepperkok; Jan Ellenberg
Journal:  Nat Rev Mol Cell Biol       Date:  2006-07-19       Impact factor: 94.444

Review 8.  Chemical labeling strategies for cell biology.

Authors:  Kevin M Marks; Garry P Nolan
Journal:  Nat Methods       Date:  2006-08       Impact factor: 28.547

9.  Untangling the wires: a strategy to trace functional interactions in signaling and gene networks.

Authors:  Boris N Kholodenko; Anatoly Kiyatkin; Frank J Bruggeman; Eduardo Sontag; Hans V Westerhoff; Jan B Hoek
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-19       Impact factor: 11.205

10.  Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate.

Authors:  Silvia D M Santos; Peter J Verveer; Philippe I H Bastiaens
Journal:  Nat Cell Biol       Date:  2007-02-18       Impact factor: 28.824

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  15 in total

1.  Development of image analysis tool for the classification of muscle fibre type using immunohistochemical staining.

Authors:  Bruno Meunier; Brigitte Picard; Thierry Astruc; Roland Labas
Journal:  Histochem Cell Biol       Date:  2010-08-14       Impact factor: 4.304

Review 2.  State-of-the-art technologies, current opinions and developments, and novel findings: news from the field of histochemistry and cell biology.

Authors:  Esther Asan; Detlev Drenckhahn
Journal:  Histochem Cell Biol       Date:  2008-11-05       Impact factor: 4.304

Review 3.  Extending the knowledge in histochemistry and cell biology.

Authors:  Wolfgang-Moritz Heupel; Detlev Drenckhahn
Journal:  Histochem Cell Biol       Date:  2009-11-28       Impact factor: 4.304

4.  A novel method for quantified, superresolved, three-dimensional colocalisation of isotropic, fluorescent particles.

Authors:  Boguslaw Obara; Asma Jabeen; Nelson Fernandez; Pierre Philippe Laissue
Journal:  Histochem Cell Biol       Date:  2013-02-05       Impact factor: 4.304

5.  Quantification of the brassinosteroid insensitive1 receptor in planta.

Authors:  G Wilma van Esse; Adrie H Westphal; Ramya Preethi Surendran; Catherine Albrecht; Boudewijn van Veen; Jan Willem Borst; Sacco C de Vries
Journal:  Plant Physiol       Date:  2011-05-26       Impact factor: 8.340

6.  Multiplexed fluorescence lifetime measurements by frequency-sweeping Fourier spectroscopy.

Authors:  Ming Zhao; Leilei Peng
Journal:  Opt Lett       Date:  2010-09-01       Impact factor: 3.776

7.  Imaging protein complex formation in the autophagy pathway: analysis of the interaction of LC3 and Atg4B(C74A) in live cells using Förster resonance energy transfer and fluorescence recovery after photobleaching.

Authors:  Lewis J Kraft; Anne K Kenworthy
Journal:  J Biomed Opt       Date:  2012-01       Impact factor: 3.170

8.  The living microarray: a high-throughput platform for measuring transcription dynamics in single cells.

Authors:  Saravanan Rajan; Haig Djambazian; Huan Chu Pham Dang; Rob Sladek; Thomas J Hudson
Journal:  BMC Genomics       Date:  2011-02-16       Impact factor: 3.969

9.  Optimizing cell arrays for accurate functional genomics.

Authors:  Sven Fengler; Philippe I H Bastiaens; Hernán E Grecco; Pedro Roda-Navarro
Journal:  BMC Res Notes       Date:  2012-07-17

10.  Introducing simulated cellular architecture to the quantitative analysis of fluorescent microscopy.

Authors:  Mark A DePristo; Lynne Chang; Ronald D Vale; Shahid M Khan; Karen Lipkow
Journal:  Prog Biophys Mol Biol       Date:  2009-07-21       Impact factor: 3.667

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