Literature DB >> 18830354

Measurement of subcellular texture by optical Gabor-like filtering with a digital micromirror device.

Robert M Pasternack1, Zhen Qian, Jing-Yi Zheng, Dimitris N Metaxas, Eileen White, Nada N Boustany.   

Abstract

We demonstrate an optical Fourier processing method to quantify object texture arising from subcellular feature orientation within unstained living cells. Using a digital micromirror device as a Fourier spatial filter, we measured cellular responses to two-dimensional optical Gabor-like filters optimized to sense orientation of nonspherical particles, such as mitochondria, with a width around 0.45 microm. Our method showed significantly rounder structures within apoptosis-defective cells lacking the proapoptotic mitochondrial effectors Bax and Bak, when compared with Bax/Bak expressing cells functional for apoptosis, consistent with reported differences in mitochondrial shape in these cells. By decoupling spatial frequency resolution from image resolution, this method enables rapid analysis of nonspherical submicrometer scatterers in an undersampled large field of view and yields spatially localized morphometric parameters that improve the quantitative assessment of biological function.

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Year:  2008        PMID: 18830354      PMCID: PMC2859170          DOI: 10.1364/ol.33.002209

Source DB:  PubMed          Journal:  Opt Lett        ISSN: 0146-9592            Impact factor:   3.776


  6 in total

1.  Role of Bax and Bak in mitochondrial morphogenesis.

Authors:  Mariusz Karbowski; Kristi L Norris; Megan M Cleland; Seon-Yong Jeong; Richard J Youle
Journal:  Nature       Date:  2006-10-01       Impact factor: 49.962

2.  Optical scatter imaging: subcellular morphometry in situ with Fourier filtering.

Authors:  N N Boustany; S C Kuo; N V Thakor
Journal:  Opt Lett       Date:  2001-07-15       Impact factor: 3.776

3.  Uncertainty relation for resolution in space, spatial frequency, and orientation optimized by two-dimensional visual cortical filters.

Authors:  J G Daugman
Journal:  J Opt Soc Am A       Date:  1985-07       Impact factor: 2.129

Review 4.  A mouse model system to genetically dissect the molecular mechanisms regulating tumorigenesis.

Authors:  Kurt Degenhardt; Eileen White
Journal:  Clin Cancer Res       Date:  2006-09-15       Impact factor: 12.531

5.  BAX and BAK mediate p53-independent suppression of tumorigenesis.

Authors:  Kurt Degenhardt; Guanghua Chen; Tullia Lindsten; Eileen White
Journal:  Cancer Cell       Date:  2002-09       Impact factor: 31.743

6.  A quantitative stereological description of the ultrastructure of normal rat liver parenchymal cells.

Authors:  A V Loud
Journal:  J Cell Biol       Date:  1968-04       Impact factor: 10.539

  6 in total
  5 in total

1.  Optical scatter microscopy based on two-dimensional Gabor filters.

Authors:  Nada N Boustany; Robert M Pasternack; Jing-Yi Zheng
Journal:  J Vis Exp       Date:  2010-06-02       Impact factor: 1.355

Review 2.  Microscopic imaging and spectroscopy with scattered light.

Authors:  Nada N Boustany; Stephen A Boppart; Vadim Backman
Journal:  Annu Rev Biomed Eng       Date:  2010-08-15       Impact factor: 9.590

3.  Coherent confocal light scattering spectroscopic microscopy evaluates cancer progression and aggressiveness in live cells and tissue.

Authors:  Douglas K Pleskow; Lei Zhang; Vladimir Turzhitsky; Mark F Coughlan; Umar Khan; Xuejun Zhang; Conor J Sheil; Maria Glyavina; Liming Chen; Shweta Shinagare; Yuri N Zakharov; Edward Vitkin; Irving Itzkan; Lev T Perelman; Le Qiu
Journal:  ACS Photonics       Date:  2021-06-20       Impact factor: 7.077

4.  Quantifying subcellular dynamics in apoptotic cells with two-dimensional Gabor filters.

Authors:  Robert M Pasternack; Bryan Rabin; Jing-Yi Zheng; Nada N Boustany
Journal:  Biomed Opt Express       Date:  2010-08-25       Impact factor: 3.732

Review 5.  Mining textural knowledge in biological images: Applications, methods and trends.

Authors:  Santa Di Cataldo; Elisa Ficarra
Journal:  Comput Struct Biotechnol J       Date:  2016-11-24       Impact factor: 7.271

  5 in total

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