Literature DB >> 18825427

The challenges for molecular nutrition research 4: the "nutritional systems biology level".

Ben van Ommen1, Duccio Cavallieri, Helen M Roche, Ulla I Klein, Hannelore Daniel.   

Abstract

Nutritional systems biology may be defined as the ultimate goal of molecular nutrition research, where all relevant aspects of regulation of metabolism in health and disease states at all levels of its complexity are taken into account to describe the molecular physiology of nutritional processes. The complexity spans from intracellular to inter-organ dynamics, and involves iterations between mathematical modelling and analysis employing all profiling methods and other biological read-outs. On the basis of such dynamic models we should be enabled to better understand how the nutritional status and nutritional challenges affect human metabolism and health. Although the achievement of this proposition may currently sound unrealistic, many initiatives in theoretical biology and biomedical sciences work on parts of the solution. This review provides examples and some recommendations for the molecular nutrition research arena to move onto the systems level.

Entities:  

Year:  2008        PMID: 18825427      PMCID: PMC2593015          DOI: 10.1007/s12263-008-0090-5

Source DB:  PubMed          Journal:  Genes Nutr        ISSN: 1555-8932            Impact factor:   5.523


  26 in total

1.  The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Authors:  M Hucka; A Finney; H M Sauro; H Bolouri; J C Doyle; H Kitano; A P Arkin; B J Bornstein; D Bray; A Cornish-Bowden; A A Cuellar; S Dronov; E D Gilles; M Ginkel; V Gor; I I Goryanin; W J Hedley; T C Hodgman; J-H Hofmeyr; P J Hunter; N S Juty; J L Kasberger; A Kremling; U Kummer; N Le Novère; L M Loew; D Lucio; P Mendes; E Minch; E D Mjolsness; Y Nakayama; M R Nelson; P F Nielsen; T Sakurada; J C Schaff; B E Shapiro; T S Shimizu; H D Spence; J Stelling; K Takahashi; M Tomita; J Wagner; J Wang
Journal:  Bioinformatics       Date:  2003-03-01       Impact factor: 6.937

Review 2.  AMPK and transcriptional regulation.

Authors:  Sean L McGee; Mark Hargreaves
Journal:  Front Biosci       Date:  2008-01-01

Review 3.  Computational modeling of cancer cachexia.

Authors:  Kevin D Hall; Vickie E Baracos
Journal:  Curr Opin Clin Nutr Metab Care       Date:  2008-05       Impact factor: 4.294

Review 4.  The mammalian target of rapamycin pathway and its role in molecular nutrition regulation.

Authors:  Jun Lian; Xiang-Hua Yan; Jian Peng; Si-Wen Jiang
Journal:  Mol Nutr Food Res       Date:  2008-04       Impact factor: 5.914

Review 5.  The role of FoxO in the regulation of metabolism.

Authors:  D N Gross; A P J van den Heuvel; M J Birnbaum
Journal:  Oncogene       Date:  2008-04-07       Impact factor: 9.867

Review 6.  The FoxO code.

Authors:  D R Calnan; A Brunet
Journal:  Oncogene       Date:  2008-04-07       Impact factor: 9.867

7.  Towards a theory of biological robustness.

Authors:  Hiroaki Kitano
Journal:  Mol Syst Biol       Date:  2007-09-18       Impact factor: 11.429

8.  A mathematical model of glutathione metabolism.

Authors:  Michael C Reed; Rachel L Thomas; Jovana Pavisic; S Jill James; Cornelia M Ulrich; H Frederik Nijhout
Journal:  Theor Biol Med Model       Date:  2008-04-28       Impact factor: 2.432

Review 9.  e-Science and biological pathway semantics.

Authors:  Joanne S Luciano; Robert D Stevens
Journal:  BMC Bioinformatics       Date:  2007-05-09       Impact factor: 3.169

10.  Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profiling.

Authors:  Christine T Ferrara; Ping Wang; Elias Chaibub Neto; Robert D Stevens; James R Bain; Brett R Wenner; Olga R Ilkayeva; Mark P Keller; Daniel A Blasiole; Christina Kendziorski; Brian S Yandell; Christopher B Newgard; Alan D Attie
Journal:  PLoS Genet       Date:  2008-03-14       Impact factor: 5.917

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  8 in total

1.  Zinc proteome interaction network as a model to identify nutrient-affected pathways in human pathologies.

Authors:  Guido Leoni; Antonio Rosato; Giuditta Perozzi; Chiara Murgia
Journal:  Genes Nutr       Date:  2014-11-04       Impact factor: 5.523

Review 2.  System biology approach intersecting diet and cell metabolism with pathogenesis of brain disorders.

Authors:  Fernando Gomez-Pinilla; Xia Yang
Journal:  Prog Neurobiol       Date:  2018-07-27       Impact factor: 11.685

Review 3.  Potential value of nutrigenomics in Crohn's disease.

Authors:  Lynnette R Ferguson
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2012-03-13       Impact factor: 46.802

4.  Consensus statement understanding health and malnutrition through a systems approach: the ENOUGH program for early life.

Authors:  Jim Kaput; Ben van Ommen; Bas Kremer; Corrado Priami; Jacqueline Pontes Monteiro; Melissa Morine; Fre Pepping; Zoey Diaz; Michael Fenech; Yiwu He; Ruud Albers; Christian A Drevon; Chris T Evelo; Robert E W Hancock; Carel Ijsselmuiden; L H Lumey; Anne-Marie Minihane; Michael Muller; Chiara Murgia; Marijana Radonjic; Bruno Sobral; Keith P West
Journal:  Genes Nutr       Date:  2013-12-22       Impact factor: 5.523

Review 5.  Micronutrient research, programs, and policy: From meta-analyses to metabolomics.

Authors:  Lindsay H Allen
Journal:  Adv Nutr       Date:  2014-05-14       Impact factor: 8.701

6.  Nutrigenetics, nutrigenomics, and selenium.

Authors:  Lynnette R Ferguson; Nishi Karunasinghe
Journal:  Front Genet       Date:  2011-04-25       Impact factor: 4.599

7.  Model-based clustering reveals vitamin D dependent multi-centrality hubs in a network of vitamin-related proteins.

Authors:  Thanh-Phuong Nguyen; Marco Scotti; Melissa J Morine; Corrado Priami
Journal:  BMC Syst Biol       Date:  2011-12-02

8.  Environmental Forces that Shape Early Development: What We Know and Still Need to Know.

Authors:  Kartik Shankar; R T Pivik; Susan L Johnson; Ben van Ommen; Elieke Demmer; Robert Murray
Journal:  Curr Dev Nutr       Date:  2017-11-22
  8 in total

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