Literature DB >> 18825283

Multiresolution stochastic simulations of reaction-diffusion processes.

Basil Bayati1, Philippe Chatelain, Petros Koumoutsakos.   

Abstract

Stochastic simulations of reaction-diffusion processes are used extensively for the modeling of complex systems in areas ranging from biology and social sciences to ecosystems and materials processing. These processes often exhibit disparate scales that render their simulation prohibitive even for massive computational resources. The problem is resolved by introducing a novel stochastic multiresolution method that enables the efficient simulation of reaction-diffusion processes as modeled by many-particle systems. The proposed method quantifies and efficiently handles the associated stiffness in simulating the system dynamics and its computational efficiency and accuracy are demonstrated in simulations of a model problem described by the Fisher-Kolmogorov equation. The method is general and can be applied to other many-particle models of physical processes.

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Year:  2008        PMID: 18825283     DOI: 10.1039/b810795e

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  1 in total

1.  An exact accelerated stochastic simulation algorithm.

Authors:  Eric Mjolsness; David Orendorff; Philippe Chatelain; Petros Koumoutsakos
Journal:  J Chem Phys       Date:  2009-04-14       Impact factor: 3.488

  1 in total

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