Literature DB >> 18823996

The 1.8-A crystal structure of alpha1-acid glycoprotein (Orosomucoid) solved by UV RIP reveals the broad drug-binding activity of this human plasma lipocalin.

Dorian L Schönfeld1, Raimond B G Ravelli, Uwe Mueller, Arne Skerra.   

Abstract

Alpha(1)-acid glycoprotein (AGP) is an important drug-binding protein in human plasma and, as an acute-phase protein, it has a strong influence on pharmacokinetics and pharmacodynamics of many pharmaceuticals. We report the crystal structure of the recombinant unglycosylated human AGP at 1.8 A resolution, which was solved using the new method of UV-radiation-damage-induced phasing (UV RIP). AGP reveals a typical lipocalin fold comprising an eight-stranded beta-barrel. Of the four loops that form the entrance to the ligand-binding site, loop 1, which connects beta-strands A and B, is among the longest observed so far and exhibits two full turns of an alpha-helix. Furthermore, it carries one of the five N-linked glycosylation sites, while a second one occurs underneath the tip of loop 2. The branched, partly hydrophobic, and partly acidic cavity, together with the presumably flexible loop 1 and the two sugar side chains at its entrance, explains the diverse ligand spectrum of AGP, which is known to vary with changes in glycosylation pattern.

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Year:  2008        PMID: 18823996     DOI: 10.1016/j.jmb.2008.09.020

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  32 in total

1.  An engineered lipocalin specific for CTLA-4 reveals a combining site with structural and conformational features similar to antibodies.

Authors:  D Schönfeld; G Matschiner; L Chatwell; S Trentmann; H Gille; M Hülsmeyer; N Brown; P M Kaye; S Schlehuber; A M Hohlbaum; A Skerra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-05       Impact factor: 11.205

2.  A new crystal form of human tear lipocalin reveals high flexibility in the loop region and induced fit in the ligand cavity.

Authors:  Daniel A Breustedt; Lorenz Chatwell; Arne Skerra
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-09-16

Review 3.  Analysis of stereoselective drug interactions with serum proteins by high-performance affinity chromatography: A historical perspective.

Authors:  Zhao Li; David S Hage
Journal:  J Pharm Biomed Anal       Date:  2017-01-11       Impact factor: 3.935

4.  Structural insights into differences in drug-binding selectivity between two forms of human alpha1-acid glycoprotein genetic variants, the A and F1*S forms.

Authors:  Koji Nishi; Tomomi Ono; Teruya Nakamura; Naoko Fukunaga; Miyoko Izumi; Hiroshi Watanabe; Ayaka Suenaga; Toru Maruyama; Yuriko Yamagata; Stephen Curry; Masaki Otagiri
Journal:  J Biol Chem       Date:  2011-02-24       Impact factor: 5.157

5.  Fixation of oligosaccharides to a surface may increase the susceptibility to human parainfluenza virus 1, 2, or 3 hemagglutinin-neuraminidase.

Authors:  Mary M Tappert; David F Smith; Gillian M Air
Journal:  J Virol       Date:  2011-09-14       Impact factor: 5.103

6.  Sugars communicate through water: oriented glycans induce water structuring.

Authors:  Rosa M Espinosa-Marzal; Giacomo Fontani; Frieder B Reusch; Marcella Roba; Nicholas D Spencer; Rowena Crockett
Journal:  Biophys J       Date:  2013-06-18       Impact factor: 4.033

7.  HDX-MS reveals orthosteric and allosteric changes in apolipoprotein-D structural dynamics upon binding of progesterone.

Authors:  Claudia S Kielkopf; Madhubrata Ghosh; Ganesh S Anand; Simon H J Brown
Journal:  Protein Sci       Date:  2018-12-20       Impact factor: 6.725

8.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  All-atom ensemble modeling to analyze small-angle x-ray scattering of glycosylated proteins.

Authors:  Miklos Guttman; Patrick Weinkam; Andrej Sali; Kelly K Lee
Journal:  Structure       Date:  2013-03-05       Impact factor: 5.006

10.  Structure-activity relationships for the binding of polymyxins with human α-1-acid glycoprotein.

Authors:  Mohammad A K Azad; Johnny X Huang; Matthew A Cooper; Kade D Roberts; Philip E Thompson; Roger L Nation; Jian Li; Tony Velkov
Journal:  Biochem Pharmacol       Date:  2012-05-12       Impact factor: 5.858

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