Literature DB >> 18818898

Construction of SSR-based chromosome map in bunching onion (Allium fistulosum).

Hikaru Tsukazaki1, Ken-Ichiro Yamashita, Shigenori Yaguchi, Shinichi Masuzaki, Hiroyuki Fukuoka, Junichi Yonemaru, Hiroyuki Kanamori, Izumi Kono, Tran Thi Minh Hang, Masayoshi Shigyo, Akio Kojima, Tadayuki Wako.   

Abstract

We have constructed a linkage map of bunching onion (Allium fistulosum L., 2n = 16) using an F(2) population of 225 plants. The map consists of 17 linkage groups with 212 bunching onion SSR markers and 42 bulb onion (A. cepa L.) SSR, InDel, CAPS or dCAPS markers, covering 2,069 cM. This is the first report of a linkage map mainly based on SSR markers in the genus Allium. With the 103 anchor markers [81 bunching onion SSRs, 11 bulb onion SSRs and 11 bulb onion non-SSRs (1 InDel, 9 CAPSs and 1 dCAPS)] whose chromosome assignments were identified in A. cepa and/or A. fistulosum, via the use of several kinds of Allium alien addition lines, 16 of the 17 linkage groups were connected to the 8 basic chromosomes of A. cepa.

Entities:  

Mesh：

Substances：

Year:  2008        PMID： 18818898     DOI： 10.1007/s00122-008-0849-5

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  10 in total

1.  Primer3 on the WWW for general users and for biologist programmers.

Authors:  S Rozen; H Skaletsky
Journal:  Methods Mol Biol       Date:  2000

2.  A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales.

Authors:  Joseph C Kuhl; Foo Cheung; Qiaoping Yuan; William Martin; Yayeh Zewdie; John McCallum; Andrew Catanach; Paul Rutherford; Kenneth C Sink; Maria Jenderek; James P Prince; Christopher D Town; Michael J Havey
Journal:  Plant Cell       Date:  2003-12-11       Impact factor: 11.277

3.  Web-based primer design for single nucleotide polymorphism analysis.

Authors:  Michael M Neff; Edward Turk; Michael Kalishman
Journal:  Trends Genet       Date:  2002-12       Impact factor: 11.639

4.  Evolution of genome size across some cultivated Allium species.

Authors:  A Ricroch; R Yockteng; S C Brown; S Nadot
Journal:  Genome       Date:  2005-06       Impact factor: 2.166

5.  Read2Marker: a data processing tool for microsatellite marker development from a large data set.

Authors:  Hiroyuki Fukuoka; Tsukasa Nunome; Yasuhiro Minamiyama; Izumi Kono; Nobukazu Namiki; Akio Kojima
Journal:  Biotechniques       Date:  2005-10       Impact factor: 1.993

6.  Production and characterization of alien chromosome additions in shallot (Allium cepa L. Aggregatum group) carrying extra chromosome(s) of Japanese bunching onion (A. fistulosum L.).

Authors:  Tran Thi Minh Hang; Masayoshi Shigyo; Naoki Yamauchi; Yosuke Tashiro
Journal:  Genes Genet Syst       Date:  2004-10       Impact factor: 1.517

7.  Establishment of a series of alien monosomic addition lines of Japanese bunching onion (Allium fistulosum L.) with extra chromosomes from shallot (A. cepa L. aggregatum group).

Authors:  M Shigyo; Y Tashiro; S Isshiki; S Miyazaki
Journal:  Genes Genet Syst       Date:  1996-12       Impact factor: 1.517

8.  Genetic mapping of expressed sequences in onion and in silico comparisons with rice show scant colinearity.

Authors:  William J Martin; John McCallum; Masayoshi Shigyo; Jernej Jakse; Joseph C Kuhl; Naoko Yamane; Meeghan Pither-Joyce; Ali Fuat Gokce; Kenneth C Sink; Christopher D Town; Michael J Havey
Journal:  Mol Genet Genomics       Date:  2005-10-20       Impact factor: 3.291

9.  Molecular and biochemical identification of alien chromosome additions in shallot (Allium cepa L. Aggregatum group) carrying extra chromosome(s) of bunching onion (A. fistulosum L.).

Authors:  Shigenori Yaguchi; Tran Thi Minh Hang; Hikaru Tsukazaki; Vu Quynh Hoa; Shin-ichi Masuzaki; Tadayuki Wako; Noriya Masamura; Shuichi Onodera; Norio Shiomi; Naoki Yamauchi; Masayoshi Shigyo
Journal:  Genes Genet Syst       Date:  2009-02       Impact factor: 1.517

10.  MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.

Authors:  E S Lander; P Green; J Abrahamson; A Barlow; M J Daly; S E Lincoln; L A Newberg; L Newburg
Journal:  Genomics       Date:  1987-10       Impact factor: 5.736
  10 in total
  5 in total

1.  Microsatellite analysis and marker development in garlic: distribution in EST sequence, genetic diversity analysis, and marker transferability across Alliaceae.

Authors:  Karina Barboza; Vanesa Beretta; Perla C Kozub; Cecilia Salinas; Mauro M Morgenfeld; Claudio R Galmarini; Pablo F Cavagnaro
Journal:  Mol Genet Genomics       Date:  2018-04-28       Impact factor: 3.291

2.  Alien genes introgression and development of alien monosomic addition lines from a threatened species, Allium roylei Stearn, to Allium cepa L.

Authors:  Hoa Q Vu; Yasuyuki Yoshimatsu; Ludmila I Khrustaleva; Naoki Yamauchi; Masayoshi Shigyo
Journal:  Theor Appl Genet       Date:  2012-01-11       Impact factor: 5.699

3.  Direct determination of the chromosomal location of bunching onion and bulb onion markers using bunching onion-shallot monosomic additions and allotriploid-bunching onion single alien deletions.

Authors:  Hikaru Tsukazaki; Ken-ichiro Yamashita; Shigenori Yaguchi; Koichiro Yamashita; Takuya Hagihara; Masayoshi Shigyo; Akio Kojima; Tadayuki Wako
Journal:  Theor Appl Genet       Date:  2010-10-12       Impact factor: 5.699

4.  AlliumMap-A comparative genomics resource for cultivated Allium vegetables.

Authors:  John McCallum; Samantha Baldwin; Masayoshi Shigyo; Yanbo Deng; Sjaak van Heusden; Meeghan Pither-Joyce; Fernand Kenel
Journal:  BMC Genomics       Date:  2012-05-04       Impact factor: 3.969

5.  Construction of a high-density linkage map and graphical representation of the arrangement of transcriptome-based unigene markers on the chromosomes of onion, Allium cepa L.

Authors:  Satoshi Fujito; Turgut Yigit Akyol; Takuya Mukae; Tadayuki Wako; Ken-Ichiro Yamashita; Hikaru Tsukazaki; Hideki Hirakawa; Keisuke Tanaka; Yoko Mine; Shusei Sato; Masayoshi Shigyo
Journal:  BMC Genomics       Date:  2021-06-26       Impact factor: 3.969
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.