Literature DB >> 18812458

Mapping of quantitative trait loci for cholesterol, LDL, HDL, and triglyceride serum concentrations in pigs.

David Gallardo1, Ramona N Pena, Marcel Amills, Luis Varona, Oscar Ramírez, Josep Reixach, Isabel Díaz, Joan Tibau, Joaquim Soler, Josep M Prat-Cuffi, José L Noguera, Raquel Quintanilla.   

Abstract

The fine mapping of polymorphisms influencing cholesterol (CT), triglyceride (TG), and lipoprotein serum levels in human and mouse has provided a wealth of knowledge about the complex genetic architecture of these traits. The extension of these genetic analyses to pigs would be of utmost importance since they constitute a valuable biological and clinical model for the study of coronary artery disease and myocardial infarction. In the present work, we performed a whole genome scan for serum lipid traits in a half-sib Duroc pig population of 350 individuals. Phenotypic registers included total CT, TG, and low (LDL)- and high (HDL)-density lipoprotein serum concentrations at 45 and 190 days of age. This approach allowed us to identify two genomewide significant quantitative trait loci (QTL) for HDL-to-LDL ratio at 45 days (SSC6, 84 cM) and for TG at 190 days (SSC4, 23 cM) as well as a number of chromosomewide significant QTL. The comparison of QTL locations at 45 and 190 days revealed a notable lack of concordance at these two time points, suggesting that the effects of these QTL are age specific. Moreover, we have observed a considerable level of correspondence among the locations of the most significant porcine lipid QTL and those identified in humans. This finding might suggest that, in mammals, diverse polymorphisms located in a common set of genes are involved in the genetic variation of serum lipid levels.

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Year:  2008        PMID: 18812458     DOI: 10.1152/physiolgenomics.90249.2008

Source DB:  PubMed          Journal:  Physiol Genomics        ISSN: 1094-8341            Impact factor:   3.107


  13 in total

1.  Genetics of fat tissue accumulation in pigs: a comparative approach.

Authors:  M Switonski; M Stachowiak; J Cieslak; M Bartz; M Grzes
Journal:  J Appl Genet       Date:  2010       Impact factor: 3.240

2.  A flexible bayesian model for testing for transmission ratio distortion.

Authors:  Joaquim Casellas; Arianna Manunza; Anna Mercader; Raquel Quintanilla; Marcel Amills
Journal:  Genetics       Date:  2014-09-29       Impact factor: 4.562

3.  Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits.

Authors:  Angela Cánovas; Raquel Quintanilla; Marcel Amills; Ramona N Pena
Journal:  BMC Genomics       Date:  2010-06-11       Impact factor: 3.969

4.  A genome-wide scan for quantitative trait loci affecting serum glucose and lipids in a White Duroc x Erhualian intercross F(2) population.

Authors:  Rongrong Chen; Jun Ren; Wanbo Li; Xiang Huang; Xueming Yan; Bin Yang; Yinggong Zhao; Yuanmei Guo; Huirong Mao; Lusheng Huang
Journal:  Mamm Genome       Date:  2009-06-04       Impact factor: 2.957

5.  Detection of quantitative trait loci affecting serum cholesterol, LDL, HDL, and triglyceride in pigs.

Authors:  Muhammad Jasim Uddin; Do Ngoc Duy; Mehmet Ulas Cinar; Dawit Tesfaye; Ernst Tholen; Heinz Juengst; Christian Looft; Karl Schellander
Journal:  BMC Genet       Date:  2011-07-13       Impact factor: 2.797

6.  Segregation of regulatory polymorphisms with effects on the gluteus medius transcriptome in a purebred pig population.

Authors:  Angela Cánovas; Ramona N Pena; David Gallardo; Oscar Ramírez; Marcel Amills; Raquel Quintanilla
Journal:  PLoS One       Date:  2012-04-24       Impact factor: 3.240

7.  Genome-Wide Association Analysis for Blood Lipid Traits Measured in Three Pig Populations Reveals a Substantial Level of Genetic Heterogeneity.

Authors:  Hui Yang; Xiaochang Huang; Zhijun Zeng; Wanchang Zhang; Chenlong Liu; Shaoming Fang; Lusheng Huang; Congying Chen
Journal:  PLoS One       Date:  2015-06-29       Impact factor: 3.240

8.  A genome-wide association analysis for porcine serum lipid traits reveals the existence of age-specific genetic determinants.

Authors:  Arianna Manunza; Joaquim Casellas; Raquel Quintanilla; Rayner González-Prendes; Ramona N Pena; Joan Tibau; Anna Mercadé; Anna Castelló; Nitdia Aznárez; Jules Hernández-Sánchez; Marcel Amills
Journal:  BMC Genomics       Date:  2014-09-04       Impact factor: 3.969

9.  RNA-seq based detection of differentially expressed genes in the skeletal muscle of Duroc pigs with distinct lipid profiles.

Authors:  T F Cardoso; A Cánovas; O Canela-Xandri; R González-Prendes; M Amills; R Quintanilla
Journal:  Sci Rep       Date:  2017-02-14       Impact factor: 4.379

10.  Genetic dissection of blood lipid traits by integrating genome-wide association study and gene expression profiling in a porcine model.

Authors:  Congying Chen; Bin Yang; Zhijun Zeng; Hui Yang; Chenlong Liu; Jun Ren; Lusheng Huang
Journal:  BMC Genomics       Date:  2013-12-03       Impact factor: 3.969

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