Literature DB >> 18805928

Breaking the 200 nm limit for routine flow linear dichroism measurements using UV synchrotron radiation.

Cedric Dicko1, Matthew R Hicks, Timothy R Dafforn, Fritz Vollrath, Alison Rodger, Søren V Hoffmann.   

Abstract

The first synchrotron radiation flow linear dichroism spectra are reported. High-quality spectral data can be collected from 450 nm down to 180 nm in contrast to the practical cutoff of approximately 200 nm on benchtop instruments. State-of-the-art microvolume capillary Couette flow linear dichroism was successfully ported to a synchrotron radiation source. The sample volume required is < 50 microL. A characterization of the synchrotron radiation linear dichroism with known DNA and DNA-ligand systems is presented and the viability of the setup confirmed. Typically, wavelengths down to 180 nm are now routinely accessible with a high signal/noise ratio with little limitation from the sample concentration. The 180 nm cutoff is due to the quartz of the Couette cell rather than the beamline itself. We show the application of the simultaneous determination of the sample absorption spectrum to calculate the reduced linear dichroism signal. Spectra for calf thymus DNA, DNA/ethidium bromide, and DNA/4',6-diamidino-2-phenylindole systems illustrate the quality of data that can be obtained.

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Year:  2008        PMID: 18805928      PMCID: PMC2599826          DOI: 10.1529/biophysj.108.139964

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

1.  Micro-volume couette flow sample orientation for absorbance and fluorescence linear dichroism.

Authors:  Rachel Marrington; Timothy R Dafforn; David J Halsall; Alison Rodger
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

Review 2.  Linear dichroism of biomolecules: which way is up?

Authors:  Timothy R Dafforn; Alison Rodger
Journal:  Curr Opin Struct Biol       Date:  2004-10       Impact factor: 6.809

3.  Validation of new microvolume Couette flow linear dichroism cells.

Authors:  Rachel Marrington; Timothy R Dafforn; David J Halsall; James I MacDonald; Matthew Hicks; Alison Rodger
Journal:  Analyst       Date:  2005-10-14       Impact factor: 4.616

4.  A new method for fibrous protein analysis illustrated by application to tubulin microtubule polymerisation and depolymerisation.

Authors:  Rachel Marrington; Mark Seymour; Alison Rodger
Journal:  Chirality       Date:  2006-09       Impact factor: 2.437

Review 5.  Circular and linear dichroism of proteins.

Authors:  Benjamin M Bulheller; Alison Rodger; Jonathan D Hirst
Journal:  Phys Chem Chem Phys       Date:  2007-02-20       Impact factor: 3.676

6.  Binding of 4',6-diamidino-2-phenylindole (DAPI) to AT regions of DNA: evidence for an allosteric conformational change.

Authors:  S Eriksson; S K Kim; M Kubista; B Nordén
Journal:  Biochemistry       Date:  1993-03-30       Impact factor: 3.162

7.  DNA Binding of Ruthenium Tris(1,10-phenanthroline): Evidence for the Dependence of Binding Mode on Metal Complex Concentration.

Authors:  Delia Z. M. Coggan; Ian S. Haworth; Paula J. Bates; Alan Robinson; Alison Rodger
Journal:  Inorg Chem       Date:  1999-10-04       Impact factor: 5.165

8.  FtsZ fiber bundling is triggered by a conformational change in bound GTP.

Authors:  Rachel Marrington; Elaine Small; Alison Rodger; Timothy R Dafforn; Stephen G Addinall
Journal:  J Biol Chem       Date:  2004-08-23       Impact factor: 5.157

9.  Flow linear dichroism to probe binding of aromatic molecules and DNA to single-walled carbon nanotubes.

Authors:  Jascindra Rajendra; Mark Baxendale; Laurence Georges Dit Rap; Alison Rodger
Journal:  J Am Chem Soc       Date:  2004-09-15       Impact factor: 15.419

10.  Restriction enzyme kinetics monitored by UV linear dichroism.

Authors:  Matthew R Hicks; Alison Rodger; Christopher M Thomas; Sarah M Batt; Timothy R Dafforn
Journal:  Biochemistry       Date:  2006-07-25       Impact factor: 3.162

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  3 in total

1.  Is photocleavage of DNA by YOYO-1 using a synchrotron radiation light source sequence dependent?

Authors:  Emma L Gilroy; Søren Vrønning Hoffmann; Nykola C Jones; Alison Rodger
Journal:  Eur Biophys J       Date:  2011-09-20       Impact factor: 1.733

2.  Characterizing the assembly of the Sup35 yeast prion fragment, GNNQQNY: structural changes accompany a fiber-to-crystal switch.

Authors:  Karen E Marshall; Matthew R Hicks; Thomas L Williams; Søren Vrønning Hoffmann; Alison Rodger; Timothy R Dafforn; Louise C Serpell
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

3.  The Bacterial Amyloid-Like Hfq Promotes In Vitro DNA Alignment.

Authors:  Frank Wien; Denis Martinez; Etienne Le Brun; Nykola C Jones; Søren Vrønning Hoffmann; Jehan Waeytens; Melanie Berbon; Birgit Habenstein; Véronique Arluison
Journal:  Microorganisms       Date:  2019-12-03
  3 in total

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