Literature DB >> 18803769

HomeoDB: a database of homeobox gene diversity.

Ying-Fu Zhong1, Thomas Butts, Peter W H Holland.   

Abstract

The homeobox genes are a large and diverse group of genes, many of which play important roles in the embryonic development of animals. Comparative study of homeobox genes, both within and between species, requires an evolutionary-based classification. HomeoDB was designed and implemented as a manually curated database to collect and present homeobox genes in an evolutionarily structured way, allowing genes, gene families and gene classes to be compared between species more readily than was possible previously. In its first release, HomeoDB includes all homeobox genes from human, amphioxus (Branchiostoma floridae) and fruitfly (Drosophila melanogaster); additional species can be added. HomeoDB is freely accessible at (http://homeodb.cbi.pku.edu.cn).

Entities:  

Mesh:

Year:  2008        PMID: 18803769     DOI: 10.1111/j.1525-142X.2008.00266.x

Source DB:  PubMed          Journal:  Evol Dev        ISSN: 1520-541X            Impact factor:   1.930


  37 in total

1.  Ancestral whole-genome duplication in the marine chelicerate horseshoe crabs.

Authors:  N J Kenny; K W Chan; W Nong; Z Qu; I Maeso; H Y Yip; T F Chan; H S Kwan; P W H Holland; K H Chu; J H L Hui
Journal:  Heredity (Edinb)       Date:  2015-09-30       Impact factor: 3.821

2.  Additive multiple k-mer transcriptome of the keelworm Pomatoceros lamarckii (Annelida; Serpulidae) reveals annelid trochophore transcription factor cassette.

Authors:  Nathan J Kenny; Sebastian M Shimeld
Journal:  Dev Genes Evol       Date:  2012-10-09       Impact factor: 0.900

3.  A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution.

Authors:  Morgane Thomas-Chollier; Valérie Ledent; Luc Leyns; Michel Vervoort
Journal:  BMC Evol Biol       Date:  2010-03-11       Impact factor: 3.260

4.  The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family.

Authors:  R Travis Moreland; Joseph F Ryan; Christopher Pan; Andreas D Baxevanis
Journal:  Database (Oxford)       Date:  2009-04-17       Impact factor: 3.451

5.  HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology.

Authors:  Ying-Fu Zhong; Peter W H Holland
Journal:  Evol Dev       Date:  2011 Nov-Dec       Impact factor: 1.930

6.  Regulation and functions of the lms homeobox gene during development of embryonic lateral transverse muscles and direct flight muscles in Drosophila.

Authors:  Dominik Müller; Teresa Jagla; Ludivine Mihaila Bodart; Nina Jährling; Hans-Ulrich Dodt; Krzysztof Jagla; Manfred Frasch
Journal:  PLoS One       Date:  2010-12-15       Impact factor: 3.240

7.  A family history of DUX4: phylogenetic analysis of DUXA, B, C and Duxbl reveals the ancestral DUX gene.

Authors:  Andreas Leidenroth; Jane E Hewitt
Journal:  BMC Evol Biol       Date:  2010-11-26       Impact factor: 3.260

8.  Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences.

Authors:  Miguel A Santos; Andrei L Turinsky; Serene Ong; Jennifer Tsai; Michael F Berger; Gwenael Badis; Shaheynoor Talukder; Andrew R Gehrke; Martha L Bulyk; Timothy R Hughes; Shoshana J Wodak
Journal:  Nucleic Acids Res       Date:  2010-08-12       Impact factor: 16.971

9.  The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa.

Authors:  Joseph F Ryan; Kevin Pang; James C Mullikin; Mark Q Martindale; Andreas D Baxevanis
Journal:  Evodevo       Date:  2010-10-04       Impact factor: 2.250

10.  Ancestral and derived attributes of the dlx gene repertoire, cluster structure and expression patterns in an African cichlid fish.

Authors:  Adina J Renz; Helen M Gunter; Jan Mf Fischer; Huan Qiu; Axel Meyer; Shigehiro Kuraku
Journal:  Evodevo       Date:  2011-01-04       Impact factor: 2.250

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